PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0002s0067.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 339aa    MW: 36483.6 Da    PI: 8.409
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0002s0067.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000145577223
                          EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                          +C++Cg+ F  ++ L+ H+ + H
  Sphfalx0002s0067.1.p 55 VCTKCGEAFHKPEALELHQISrH 77
                          8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.7465482IPR007087Zinc finger, C2H2
PROSITE patternPS0002805477IPR007087Zinc finger, C2H2
SuperFamilySSF563992.88E-1579126No hitNo description
Gene3DG3DSA:3.90.228.107.6E-1682140IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563992.88E-15167337No hitNo description
Gene3DG3DSA:3.90.228.107.6E-16173337IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MCLVRGCCEC SMQASCSQIS PELDANQSFP TIRGSATSLI HSVGALHGST SPKCVCTKCG  60
EAFHKPEALE LHQISRHAVS QLGSGNSSLN VVEIIFRTSW LTKETPCGKI ERILKIDNTQ  120
RAISEFEKYR NKVKERHAAG TSTTGDLLLK NKTSTSTTTS HDILHDERCL ADGNELLRFF  180
ATSLSCSLGA NSSSSSLCSM KTCNVCSVIR WGFGNSNKKQ AGGGSGNHHH HQQLGIYTTA  240
TSGKAHQLQI SQLEEKENRT PVAASLRNGK KHAMLVCRVI AGRIQKLAAG DKMPPFMSLL  300
PLGYDSVATD CGPTANLDEV TVFDPKAVLP CFVVIYTI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024362662.16e-95uncharacterized protein LOC112275993
TrEMBLA9TR291e-93A9TR29_PHYPA; Predicted protein
STRINGPP1S294_7V6.12e-94(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-52C2H2-like zinc finger protein