PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0002s0001.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C3H

Protein Properties

Length: 386aa MW: 43506.7 Da PI: 8.4045

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0002s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.7	8.1e-08	12	37	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+ C+ +++ G+C++ +C+FaHg+ Sphfalx0002s0001.1.p 12 YKTKMCSLYMQRGHCPR-QSCSFAHGE 37 9**************.*****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	2.3E-13	9	43	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.178	11	38	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.12E-7	11	42	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0073	11	37	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-4	12	37	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MPYTMPYSRD LYKTKMCSLY MQRGHCPRQS CSFAHGESEL RKLPGCYDRG GDLRNTLDRR 60 RSPSCRRERG HHWSYDHRLT HHDRVASSTT KYSCQWIRRD IKKHPDATEP HLSDVSGPID 120 GAEDVAVDEA NDKAGSRSIS TNSQEVLEEQ LQEVLSHNKT LLTQKVTLEH SIEGKVLETT 180 ELSNKIALLE TQLASTHDVC KGLASKTKKF VKVYKAFFRS QEELKRSQAK LMKLVDDTSG 240 DSGPKLDMDV DYVENHTTNN EHPIHEVPTN NQINHRLTTE GPRMLKQENE ANNSNHLSST 300 IEVPVLMEAS QPRKLTTAQE RRRALLQKAL QQGNLSLKTS DGRDGNTPDH KMSCVFSLNG 360 EFRGDPLPST ATRVNHVGVS VTPRS*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MPYTMPYSRD LYKTKMCSLY MQRGHCPRQS CSFAHGESEL RKLPGCYDRG GDLRNTLDRR  60
RSPSCRRERG HHWSYDHRLT HHDRVASSTT KYSCQWIRRD IKKHPDATEP HLSDVSGPID  120
GAEDVAVDEA NDKAGSRSIS TNSQEVLEEQ LQEVLSHNKT LLTQKVTLEH SIEGKVLETT  180
ELSNKIALLE TQLASTHDVC KGLASKTKKF VKVYKAFFRS QEELKRSQAK LMKLVDDTSG  240
DSGPKLDMDV DYVENHTTNN EHPIHEVPTN NQINHRLTTE GPRMLKQENE ANNSNHLSST  300
IEVPVLMEAS QPRKLTTAQE RRRALLQKAL QQGNLSLKTS DGRDGNTPDH KMSCVFSLNG  360
EFRGDPLPST ATRVNHVGVS VTPRS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	8e-23	C3H family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0002s0001.1.p