PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0001s0415.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MIKC_MADS
Protein Properties Length: 388aa    MW: 43179.4 Da    PI: 8.152
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0001s0415.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.73e-28959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ien +nrqvt+skRrng++KKA+ELSvLCd++va+i+fs++gkl  y++
  Sphfalx0001s0415.1.p  9 KKIENPTNRQVTYSKRRNGLIKKAYELSVLCDIDVALIMFSPSGKLTQYCN 59
                          68***********************************************85 PP
2K-box15.57.4e-071352021074
                 K-box  10 eeakaeslqqelakLkkeienLqreqRhllGed..Les.LslkeLqqLeqqLekslkkiRskKnelll 74 
                           ++ +   lq e++kL  e + Lq+  R +l ++  +++  s+++L ++e++Le++l+++R +K+ +  
  Sphfalx0001s0415.1.p 135 KSYEVGVLQDEVKKLTHEKDLLQQRARLFLADEqiIQTvTSVQQLANMETELEQALERVRRHKSLVTN 202
                           455566799**************9999988765444542589*******************9986643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.31161IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-32288IPR002100Transcription factor, MADS-box
CDDcd002653.49E-38271No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-26323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.642139229IPR002487Transcription factor, K-box
PfamPF014862.6E-5141201IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGRVKLEIKK IENPTNRQVT YSKRRNGLIK KAYELSVLCD IDVALIMFSP SGKLTQYCNC  60
SIEDVITRFA NLPLHERNKS FEDMLTRFAN FHMHHDRNKY TRKSENLEYL HKALKKLSGE  120
KDLALNQQLP SGSSKSYEVG VLQDEVKKLT HEKDLLQQRA RLFLADEQII QTVTSVQQLA  180
NMETELEQAL ERVRRHKSLV TNAYDQAANA MQRQHEFMGN MQLMAMQRGG AMTGAQQAAA  240
AASSFLQWNM PEQQRDQPAI LQDFMEHQSN ATSLLPAQMS RELGSNSGLA STSGFFPAAS  300
QTKLEGGNSM VAFAAATTSS SSGATAAAAE GVAETFLSPT EQQQQHGSNA SVPWHSSAHQ  360
SHHHHQQAYS GSQYPTAYFS QNPDAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A2e-17269168Myocyte-specific enhancer factor 2A
3mu6_B2e-17269168Myocyte-specific enhancer factor 2A
3mu6_C2e-17269168Myocyte-specific enhancer factor 2A
3mu6_D2e-17269168Myocyte-specific enhancer factor 2A
6byy_A2e-17185185MEF2 CHIMERA
6byy_B2e-17185185MEF2 CHIMERA
6byy_C2e-17185185MEF2 CHIMERA
6byy_D2e-17185185MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3344581e-154GQ334458.1 Sphagnum subsecundum MIKC* MADS-box transcription factor (MADS4) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383906.11e-159agamous-like MADS-box protein AGL66 isoform X2
TrEMBLD3IZU00.0D3IZU0_9BRYO; MIKC* MADS-box transcription factor
STRINGPP1S90_121V6.21e-159(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.13e-37AGAMOUS-like 66