PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0001s0394.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WRKY
Protein Properties Length: 658aa    MW: 70357.4 Da    PI: 5.971
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0001s0394.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.5e-31363421159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ++Dgy+WrKYGqK vk+s++prsYYrCt ++Cpv+k+versaed+ +v++tYeg+H h 
  Sphfalx0001s0394.1.p 363 MNDGYKWRKYGQKAVKNSPHPRSYYRCTNQKCPVRKRVERSAEDTGLVITTYEGTHIHV 421
                           58******************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-34348422IPR003657WRKY domain
SuperFamilySSF1182902.88E-28355422IPR003657WRKY domain
PROSITE profilePS5081130.745358423IPR003657WRKY domain
SMARTSM007741.1E-36363422IPR003657WRKY domain
PfamPF031064.6E-25364420IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MGGGDESLEL EKLMRSFSGE DDVAVSQQHL FVEPPLRDVD ALMVQQQQQQ GFFSSFTDDL  60
LHPLVVPSPT AQWQSLISMN ATDPLVSGGF SGSAAFAATS NSFFLQQQLQ KDDFLLSSDS  120
PIAEFANAAA WSCFGENQNT PRIGNFPGNN SQVLNNYEAI QQKLLLTTPI SSVPSPRGRN  180
QVSTPPQDLG HHHHHQQQQL GDIPDFQKQF SSSSPSLQMN TQFHSPSPTG SLSPVLTSSP  240
SPATTHGCRS PSPARLPLAV ASGGASTPLP STPNSPFSSG SSSDEGPDDD DDASKLATLV  300
EVSASSTPKR KTPDPAMDKN EEIESSPELK KLSSSIKAGK KGGPKRVREP RYAIQTRSEI  360
DVMNDGYKWR KYGQKAVKNS PHPRSYYRCT NQKCPVRKRV ERSAEDTGLV ITTYEGTHIH  420
VNPPPTNSRN SSSDVYPPTS PPLADTRENG GPGAAAEAAA YQQPPTSSFG PLTSPNPVIP  480
TASCSSFDLT AQIQSRAETD HASTASKSLT LQAGQEVQTG GNVGCQSLND QVQSQSFLIS  540
HRSLQEFNPS SSAVQGLSNA LQPQQLLGGA QDQMQAQNSG GQMHRPDNSR AQGIGSDSDV  600
NLFGAFKLPF WTSNHEQPSS AATRGALEQG TNNDSLRDKS PVNGGLLEDI VRFGVRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-26351424275WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.24e-35WRKY DNA-binding protein 57