PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0001s0374.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | Trihelix | ||||||||
Protein Properties | Length: 552aa MW: 60754.4 Da PI: 5.9549 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 44 | 6e-14 | 421 | 517 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklk..kplWeevskkm..rergferspkqCkekwenlnkrykkike.......gekkrt.sessst 78 Wt++ev aL+++r em++++ r+k+k + W + ++m + rgf+++++ Ck+k + l ++ykk +e +e ++t ++s++ Sphfalx0001s0374.1.p 421 WTNSEVEALVALRGEMHDEFVRNKQKqgVNTWNKLHIRMqaMCRGFHKTANACKKKYSILYNEYKKDREclkengdIEASGTpGTRSKK 509 ********************9976553389*********999***********************988622212114555653467899 PP trihelix 79 cpyfdqle 86 c+yfdq++ Sphfalx0001s0374.1.p 510 CAYFDQMD 517 ******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54695 | 2.56E-17 | 54 | 162 | IPR011333 | SKP1/BTB/POZ domain |
Gene3D | G3DSA:3.30.710.10 | 6.9E-20 | 55 | 163 | No hit | No description |
Pfam | PF00651 | 7.4E-20 | 57 | 162 | IPR000210 | BTB/POZ domain |
SMART | SM00225 | 5.1E-15 | 66 | 163 | IPR000210 | BTB/POZ domain |
PROSITE profile | PS50097 | 15.204 | 66 | 131 | IPR000210 | BTB/POZ domain |
Pfam | PF13837 | 3.7E-11 | 419 | 517 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 552 aa Download sequence Send to blast |
MTMPTQEATT SVHLLNKKRS TRISAASSDS VQSLKAQVKR LEKQREFLTL WKADVLNGFN 60 LEASYVDVKL QACDGTPVFA HKAVLAARSE EFDAIFQADT NAKEIEIPEM AGEELKAFVS 120 FFYTGSLPIN VIAEYMTTFL HVAEKYKVHY LAAVCEDVLV SKLSRDNAIT TFDIAKKYCS 180 GDVKEAVLKK ALKMGEISTY GEYKLYTQKD PGLLLEFYEQ LSERIGPLLA KRRRITPENG 240 AGDHDVNNTL TFYDKGTGKS DSGDDEVEDD QKGDDDDMRH DGENEFSLGS TVPPNGSSPF 300 GSGGNSGRVV FWHGGPPIPP QHGGTITGDG YDKGATYVPS HRPAFDNQIV SGPPYGVPPF 360 MPPVYPSSPL LRGGFPGAGT GAVVSMEVGP VVGEDLVQEP KGKRIPSDGQ TKLEGKRGQN 420 WTNSEVEALV ALRGEMHDEF VRNKQKQGVN TWNKLHIRMQ AMCRGFHKTA NACKKKYSIL 480 YNEYKKDREC LKENGDIEAS GTPGTRSKKC AYFDQMDMWH LKRLENKVGL AGGTADSPCT 540 STEDMEIKEE E* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 230 | 234 | KRRRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024395616.1 | 0.0 | uncharacterized protein LOC112291890 | ||||
TrEMBL | A0A2K1JIC6 | 0.0 | A0A2K1JIC6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S48_17V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25990.1 | 4e-06 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0001s0374.1.p |