PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0001s0248.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 789aa MW: 84536.5 Da PI: 5.8672

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0001s0248.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.2	2.3e-16	571	616	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eYIk+L Sphfalx0001s0248.1.p 571 VHNLSERRRRDRINEKMKSLQELIPNS-----NKTDKASMLDEAIEYIKML 616 6***********************7.....5**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.98E-20	565	626	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.705	567	616	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.21E-17	570	621	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.3E-19	571	626	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.1E-14	571	616	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.0E-18	573	622	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence Send to blast
MSFCVPEWGT RSGGMLDAVT PANDYPQLAP KGRGDSIRHQ KAHLPDLASV PDQDSLELAW 60 MENGDAENGH FDMQCPTSEG CNSELQVNYS ANWGIGHGME DTGLPSKLPG MLVNEPSLAT 120 AGDQALPIIN IQDDEMISWL QDPPEDSLDQ NYGVDLFGEL PVTNIQVFAD AFSGQGMIGR 180 TARMQPSGIS GNIGNSAPAT RDVNADMAMT LGACRAAGLI RQGAGVEAFS QVRTLQPLGT 240 RQPPGITSSS SPSLNQGITE TENPFRTSSP MSGSLLVPML PPKSKPVAAA TFNSLPSNNP 300 LVEKSGAMNF PVFARPAALM KANLQSLNMT SILPSNLMRF KSQQGRLVNL ETSMSTSSSI 360 TELSKQGQTC ASQPRRDGSL QTQNELEMQF EAATGSHQSP NVGVDSLSPM PSSVSRKEVQ 420 AVAASAGKAT YCGTEPKDQD TSHHSSGTTG SAVPTSSDVG VSQTTSIPEV QEPTITSGSG 480 GATVQAYSDP GALQGKSVPE VQEPTITSAL GESGNTGLKR FVKEISSAAN KKSKKLHVVE 540 EVECTRAEHD SLDVKKPNRG STAKRNRAAE VHNLSERRRR DRINEKMKSL QELIPNSNKT 600 DKASMLDEAI EYIKMLKLQL QMMSMRSGVN LPPMVLPSGI HCMQMPQMPQ MPQMPQMPMS 660 MGVGMGMGMG MGMGLGMGMV DMGATGSGQG VMPAMSFMGP VPPNRGVPSM MAAETRDPCL 720 VNANIMDPRK AYLTHQHQAM QIQQPMTNEM YNAYILQHQQ QQQQQYQQYQ LQQEHHQSFT 780 MAAGPSPP*

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence Send to blast

MSFCVPEWGT RSGGMLDAVT PANDYPQLAP KGRGDSIRHQ KAHLPDLASV PDQDSLELAW  60
MENGDAENGH FDMQCPTSEG CNSELQVNYS ANWGIGHGME DTGLPSKLPG MLVNEPSLAT  120
AGDQALPIIN IQDDEMISWL QDPPEDSLDQ NYGVDLFGEL PVTNIQVFAD AFSGQGMIGR  180
TARMQPSGIS GNIGNSAPAT RDVNADMAMT LGACRAAGLI RQGAGVEAFS QVRTLQPLGT  240
RQPPGITSSS SPSLNQGITE TENPFRTSSP MSGSLLVPML PPKSKPVAAA TFNSLPSNNP  300
LVEKSGAMNF PVFARPAALM KANLQSLNMT SILPSNLMRF KSQQGRLVNL ETSMSTSSSI  360
TELSKQGQTC ASQPRRDGSL QTQNELEMQF EAATGSHQSP NVGVDSLSPM PSSVSRKEVQ  420
AVAASAGKAT YCGTEPKDQD TSHHSSGTTG SAVPTSSDVG VSQTTSIPEV QEPTITSGSG  480
GATVQAYSDP GALQGKSVPE VQEPTITSAL GESGNTGLKR FVKEISSAAN KKSKKLHVVE  540
EVECTRAEHD SLDVKKPNRG STAKRNRAAE VHNLSERRRR DRINEKMKSL QELIPNSNKT  600
DKASMLDEAI EYIKMLKLQL QMMSMRSGVN LPPMVLPSGI HCMQMPQMPQ MPQMPQMPMS  660
MGVGMGMGMG MGMGLGMGMV DMGATGSGQG VMPAMSFMGP VPPNRGVPSM MAAETRDPCL  720
VNANIMDPRK AYLTHQHQAM QIQQPMTNEM YNAYILQHQQ QQQQQYQQYQ LQQEHHQSFT  780
MAAGPSPP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	575	580	ERRRRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-26	phytochrome interacting factor 3

Link Out ? help Back to Top
Phytozome	Sphfalx0001s0248.1.p