PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0001s0194.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 728aa MW: 80199.6 Da PI: 6.1042

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0001s0194.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.3	1.6e-09	547	591	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+ +Er RR++ N+++++L +++P kK + +++L ++++YI++L Sphfalx0001s0194.1.p 547 HKLAERCRRSKFNEKMHTLCTIVPII-----KKKDRVSVLSHTIDYIRQL 591 999********************7.....699*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.598	542	591	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-13	545	608	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.39E-9	547	596	No hit	No description
Pfam	PF00010	3.5E-7	547	591	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.3E-13	547	608	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-10	548	597	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence Send to blast
MSQLEMPGAS SLLDLRMPED ETRHNCLKTL VQSLNWTYGV IWKLSPGDRF DLEWVDGWFD 60 PTSFKSGHTL MPQFYSIFKT CNFRDPSAHG YSALALRQVA SFWWTSQMAE VPTDKCKARF 120 LQEAHIQTIV CIPRLGADGM YCAELATTAL VSKTDALMNI LQRYVSTLVT PPMFSAMESP 180 SASTLSSMVS LGHEYPNNNL FSSPAVVPPL NSRTSAGAQM MAPGSSGFVP PLNANRYIPG 240 DFNESLGSSG TILREEEPYF QWTTPGNQSL FFGYGSGLFD EPDTDADVEK TMFNSLDSSK 300 GASKSASSLG VMSPCTWDSD TLEPEEVVIQ APAVPDFPVE HSIEHSRRIN SVSLPAQSAE 360 DLLVLLAGPK PHVTSASKCT MTASLPTDAQ FSSFSHLLDT GSVYDTPEAQ VKTMDQATSS 420 IDPFCLKQST HMSFLQNLSG QLPHGTKPLM DVYDNGLALP ALCFRHNMNS PFQRRVRFKL 480 SEQGRDSHPE RQSLLRKWTE KIVPMIEEHA QQQKLAEQEL ARLHSTPSSG DSARRSNPAQ 540 DDAAHIHKLA ERCRRSKFNE KMHTLCTIVP IIKKKDRVSV LSHTIDYIRQ LTTQVAHLEK 600 ADHALKQKKG ADYPHPPART TLIQAQDDSS LDASSSSGGL IKVAVCPNDD GLVINVEASN 660 KIETLIRILS SSRELGFEIR SFNSIRIDDQ VQVTVNVVAQ GAHEMSSMDV QEALQRFLVV 720 SDGSLPV*

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence Send to blast

MSQLEMPGAS SLLDLRMPED ETRHNCLKTL VQSLNWTYGV IWKLSPGDRF DLEWVDGWFD  60
PTSFKSGHTL MPQFYSIFKT CNFRDPSAHG YSALALRQVA SFWWTSQMAE VPTDKCKARF  120
LQEAHIQTIV CIPRLGADGM YCAELATTAL VSKTDALMNI LQRYVSTLVT PPMFSAMESP  180
SASTLSSMVS LGHEYPNNNL FSSPAVVPPL NSRTSAGAQM MAPGSSGFVP PLNANRYIPG  240
DFNESLGSSG TILREEEPYF QWTTPGNQSL FFGYGSGLFD EPDTDADVEK TMFNSLDSSK  300
GASKSASSLG VMSPCTWDSD TLEPEEVVIQ APAVPDFPVE HSIEHSRRIN SVSLPAQSAE  360
DLLVLLAGPK PHVTSASKCT MTASLPTDAQ FSSFSHLLDT GSVYDTPEAQ VKTMDQATSS  420
IDPFCLKQST HMSFLQNLSG QLPHGTKPLM DVYDNGLALP ALCFRHNMNS PFQRRVRFKL  480
SEQGRDSHPE RQSLLRKWTE KIVPMIEEHA QQQKLAEQEL ARLHSTPSSG DSARRSNPAQ  540
DDAAHIHKLA ERCRRSKFNE KMHTLCTIVP IIKKKDRVSV LSHTIDYIRQ LTTQVAHLEK  600
ADHALKQKKG ADYPHPPART TLIQAQDDSS LDASSSSGGL IKVAVCPNDD GLVINVEASN  660
KIETLIRILS SSRELGFEIR SFNSIRIDDQ VQVTVNVVAQ GAHEMSSMDV QEALQRFLVV  720
SDGSLPV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	3e-11	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0001s0194.1.p