PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0001s0192.3.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Trihelix

Protein Properties

Length: 491aa MW: 53041.3 Da PI: 4.9429

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0001s0192.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.1	9.7e-13	228	329	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.................rergferspkqCkekwenlnkrykkikegekkrt 72 +W++ + +L++a +e+ ++l+r++ + W+++++ + + + ++++qC+ k +nl+kryk ++e + Sphfalx0001s0192.3.p 228 EWSDGATIVLLNAFSEKYRALERSNFTSKIWADIAACVnarrvplgakgttsgasQGEDTPKTQEQCRIKVDNLKKRYKVEREKMLTS- 315 5**************************************************98888899**************999988874. PP trihelix 73 sessstcpyfdqle 86 ++s++p+fd l+ Sphfalx0001s0192.3.p 316 GMTTSKWPFFDALD 329 677789***998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.1E-16	228	331	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MEVKKVGNVA SGGKGLVHEV GVGEIGGGVF HGGGGGGGGD GVGGQQQEGK DVGILLYQEV 60 MEEDDQEQVG NMSLEVEKIG GGDVVHGRAE EMELGGGGAC EVLRHVDGDE NGGSMEDMVM 120 WRGKIEVCAE GGHVVVGSLE DGVSRGGEGF KLQEVDQDVM EDKNGERRRR EVMEHGRDLQ 180 TDMVRFTDEK QQDDGVDRQQ IEGEAETTTI SPSVIKGRGK TPRDTVVEWS DGATIVLLNA 240 FSEKYRALER SNFTSKIWAD IAACVNARRV PLGAKGTTSG ASQGEDTPKT QEQCRIKVDN 300 LKKRYKVERE KMLTSGMTTS KWPFFDALDD LVGSKPRNTR AGGGTGGSLR LGLANGQPLA 360 LRSSGEEGDR IFYLEARNGL NVDHKPDTFY NFTPLSGRGK RKKALEDLER EHVIAASLRA 420 LFEGFNIAGN IIDAMAHEEV DEDTLLNSRD VGSLLEKILA KHQLAIKLGP AERIKQAIEE 480 AKERKLRAAQ *

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MEVKKVGNVA SGGKGLVHEV GVGEIGGGVF HGGGGGGGGD GVGGQQQEGK DVGILLYQEV  60
MEEDDQEQVG NMSLEVEKIG GGDVVHGRAE EMELGGGGAC EVLRHVDGDE NGGSMEDMVM  120
WRGKIEVCAE GGHVVVGSLE DGVSRGGEGF KLQEVDQDVM EDKNGERRRR EVMEHGRDLQ  180
TDMVRFTDEK QQDDGVDRQQ IEGEAETTTI SPSVIKGRGK TPRDTVVEWS DGATIVLLNA  240
FSEKYRALER SNFTSKIWAD IAACVNARRV PLGAKGTTSG ASQGEDTPKT QEQCRIKVDN  300
LKKRYKVERE KMLTSGMTTS KWPFFDALDD LVGSKPRNTR AGGGTGGSLR LGLANGQPLA  360
LRSSGEEGDR IFYLEARNGL NVDHKPDTFY NFTPLSGRGK RKKALEDLER EHVIAASLRA  420
LFEGFNIAGN IIDAMAHEEV DEDTLLNSRD VGSLLEKILA KHQLAIKLGP AERIKQAIEE  480
AKERKLRAAQ *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	170	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024389101.1	1e-105	uncharacterized protein LOC112288783
TrEMBL	A0A2K1JTD1	1e-103	A0A2K1JTD1_PHYPA; Uncharacterized protein
STRING	PP1S39_431V6.1	1e-104	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.2	8e-20	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0001s0192.3.p