PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0001s0192.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | Trihelix | ||||||||
Protein Properties | Length: 491aa MW: 53041.3 Da PI: 4.9429 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 40.1 | 9.7e-13 | 228 | 329 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.................rergferspkqCkekwenlnkrykkikegekkrt 72 +W++ + +L++a +e+ ++l+r++ + W+++++ + + + ++++qC+ k +nl+kryk ++e + Sphfalx0001s0192.1.p 228 EWSDGATIVLLNAFSEKYRALERSNFTSKIWADIAACVnarrvplgakgttsgasQGEDTPKTQEQCRIKVDNLKKRYKVEREKMLTS- 315 5****************************************************98888899******************999988874. PP trihelix 73 sessstcpyfdqle 86 ++s++p+fd l+ Sphfalx0001s0192.1.p 316 GMTTSKWPFFDALD 329 677789*****998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.1E-16 | 228 | 331 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MEVKKVGNVA SGGKGLVHEV GVGEIGGGVF HGGGGGGGGD GVGGQQQEGK DVGILLYQEV 60 MEEDDQEQVG NMSLEVEKIG GGDVVHGRAE EMELGGGGAC EVLRHVDGDE NGGSMEDMVM 120 WRGKIEVCAE GGHVVVGSLE DGVSRGGEGF KLQEVDQDVM EDKNGERRRR EVMEHGRDLQ 180 TDMVRFTDEK QQDDGVDRQQ IEGEAETTTI SPSVIKGRGK TPRDTVVEWS DGATIVLLNA 240 FSEKYRALER SNFTSKIWAD IAACVNARRV PLGAKGTTSG ASQGEDTPKT QEQCRIKVDN 300 LKKRYKVERE KMLTSGMTTS KWPFFDALDD LVGSKPRNTR AGGGTGGSLR LGLANGQPLA 360 LRSSGEEGDR IFYLEARNGL NVDHKPDTFY NFTPLSGRGK RKKALEDLER EHVIAASLRA 420 LFEGFNIAGN IIDAMAHEEV DEDTLLNSRD VGSLLEKILA KHQLAIKLGP AERIKQAIEE 480 AKERKLRAAQ * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 170 | ERRRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024389101.1 | 1e-105 | uncharacterized protein LOC112288783 | ||||
TrEMBL | A0A2K1JTD1 | 1e-103 | A0A2K1JTD1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S39_431V6.1 | 1e-104 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.2 | 8e-20 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0001s0192.1.p |