PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0001s0160.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | ARF | ||||||||
Protein Properties | Length: 663aa MW: 72675.7 Da PI: 7.5923 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.5 | 1.3e-23 | 133 | 234 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD +vF Sphfalx0001s0160.1.p 133 FAKTLTQSDANNGGGFSVPRYCAETIfppldynADPPVQ--TVLAKDVHGNVWKFRHIYRGTPRRHLLTTGWSTFVNQKRLVAGDAIVF 219 89****************************996445444..8999******************************************** PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 + +++el+v+v+r+ Sphfalx0001s0160.1.p 220 L--RGTSGELCVGVRRS 234 *..449999*****985 PP | |||||||
2 | Auxin_resp | 105.9 | 4.5e-35 | 310 | 392 | 2 | 83 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a a +++FevvY+Prast+eF+vk++ v++al++ ++ GmRfkmafetedss+ ++ +Gt+++v+ +dp+ WpnS+Wr+L+ Sphfalx0001s0160.1.p 310 AMLAVAGKPFEVVYYPRASTAEFCVKASLVKQALDQAWCGGMRFKMAFETEDSSRVSWfMGTISAVQPADPILWPNSPWRVLQ 392 56677899*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.01E-30 | 128 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.5E-37 | 128 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.55E-22 | 132 | 233 | No hit | No description |
Pfam | PF02362 | 2.1E-21 | 133 | 234 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-20 | 133 | 235 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.534 | 133 | 235 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-30 | 310 | 392 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 663 aa Download sequence Send to blast |
MNVKAETLDH DSGGRERRRA GVVEVTGSLD PQLWHACAGG MVQLPSIGAK VVYFPQGHAE 60 QASTTPEFPT SLGPWGTVPC QVVSVRFMAD IETDEVFARL RLQPEPVSSM YLNGRVVEEE 120 DMPPPPRGRP ASFAKTLTQS DANNGGGFSV PRYCAETIFP PLDYNADPPV QTVLAKDVHG 180 NVWKFRHIYR GTPRRHLLTT GWSTFVNQKR LVAGDAIVFL RGTSGELCVG VRRSMRGTAG 240 SDSSAWHSSI TTTSSMLVKG TESIFDYNAA TGTGGGENTV IWRGGITNSS TSSFAQNHAQ 300 VTAKSVLEAA MLAVAGKPFE VVYYPRASTA EFCVKASLVK QALDQAWCGG MRFKMAFETE 360 DSSRVSWFMG TISAVQPADP ILWPNSPWRV LQVTWDEPDL LQGVGRVSPW QVELVATLPL 420 QLPPLPVTKK KSRPALQSEL MQLQPPGLPN GLLINNFVPG QLPALLEDAS AGMQGARHDH 480 IYGLFVPDFR PGYKHPHDFL PDTNNFHAEN VLPARAPLLP DPRIFSSLPD RMSLPMANVQ 540 SERSNTTTKS SPSSFFLFGQ SISPAQGKDQ LCGDLPFLCK VFRDCEEVGR TLDLSKLATY 600 EELYERLAVM FSIPKALLHD RVVYKANGFN KGIGHESYRN FATSVKRIFI LSEPERINVT 660 LS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 5e-80 | 29 | 413 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372940.1 | 0.0 | auxin response factor 10-like isoform X1 | ||||
Refseq | XP_024372941.1 | 0.0 | auxin response factor 10-like isoform X1 | ||||
Refseq | XP_024372942.1 | 0.0 | auxin response factor 10-like isoform X2 | ||||
Refseq | XP_024372943.1 | 0.0 | auxin response factor 10-like isoform X2 | ||||
Swissprot | Q93YR9 | 1e-177 | ARFP_ARATH; Auxin response factor 16 | ||||
TrEMBL | A0A2K1KN89 | 0.0 | A0A2K1KN89_PHYPA; Auxin response factor | ||||
STRING | PP1S339_47V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 1e-166 | auxin response factor 10 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0001s0160.1.p |