PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0001s0160.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ARF
Protein Properties Length: 663aa    MW: 72675.7 Da    PI: 7.5923
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0001s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.3e-23133234199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD +vF
  Sphfalx0001s0160.1.p 133 FAKTLTQSDANNGGGFSVPRYCAETIfppldynADPPVQ--TVLAKDVHGNVWKFRHIYRGTPRRHLLTTGWSTFVNQKRLVAGDAIVF 219
                           89****************************996445444..8999******************************************** PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                              + +++el+v+v+r+
  Sphfalx0001s0160.1.p 220 L--RGTSGELCVGVRRS 234
                           *..449999*****985 PP

2Auxin_resp105.94.5e-35310392283
            Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                           a  a  +++FevvY+Prast+eF+vk++ v++al++ ++ GmRfkmafetedss+ ++ +Gt+++v+ +dp+ WpnS+Wr+L+
  Sphfalx0001s0160.1.p 310 AMLAVAGKPFEVVYYPRASTAEFCVKASLVKQALDQAWCGGMRFKMAFETEDSSRVSWfMGTISAVQPADPILWPNSPWRVLQ 392
                           56677899*************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-30128249IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.5E-37128245IPR015300DNA-binding pseudobarrel domain
CDDcd100172.55E-22132233No hitNo description
PfamPF023622.1E-21133234IPR003340B3 DNA binding domain
SMARTSM010191.8E-20133235IPR003340B3 DNA binding domain
PROSITE profilePS5086312.534133235IPR003340B3 DNA binding domain
PfamPF065071.4E-30310392IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MNVKAETLDH DSGGRERRRA GVVEVTGSLD PQLWHACAGG MVQLPSIGAK VVYFPQGHAE  60
QASTTPEFPT SLGPWGTVPC QVVSVRFMAD IETDEVFARL RLQPEPVSSM YLNGRVVEEE  120
DMPPPPRGRP ASFAKTLTQS DANNGGGFSV PRYCAETIFP PLDYNADPPV QTVLAKDVHG  180
NVWKFRHIYR GTPRRHLLTT GWSTFVNQKR LVAGDAIVFL RGTSGELCVG VRRSMRGTAG  240
SDSSAWHSSI TTTSSMLVKG TESIFDYNAA TGTGGGENTV IWRGGITNSS TSSFAQNHAQ  300
VTAKSVLEAA MLAVAGKPFE VVYYPRASTA EFCVKASLVK QALDQAWCGG MRFKMAFETE  360
DSSRVSWFMG TISAVQPADP ILWPNSPWRV LQVTWDEPDL LQGVGRVSPW QVELVATLPL  420
QLPPLPVTKK KSRPALQSEL MQLQPPGLPN GLLINNFVPG QLPALLEDAS AGMQGARHDH  480
IYGLFVPDFR PGYKHPHDFL PDTNNFHAEN VLPARAPLLP DPRIFSSLPD RMSLPMANVQ  540
SERSNTTTKS SPSSFFLFGQ SISPAQGKDQ LCGDLPFLCK VFRDCEEVGR TLDLSKLATY  600
EELYERLAVM FSIPKALLHD RVVYKANGFN KGIGHESYRN FATSVKRIFI LSEPERINVT  660
LS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-802941351388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372940.10.0auxin response factor 10-like isoform X1
RefseqXP_024372941.10.0auxin response factor 10-like isoform X1
RefseqXP_024372942.10.0auxin response factor 10-like isoform X2
RefseqXP_024372943.10.0auxin response factor 10-like isoform X2
SwissprotQ93YR91e-177ARFP_ARATH; Auxin response factor 16
TrEMBLA0A2K1KN890.0A0A2K1KN89_PHYPA; Auxin response factor
STRINGPP1S339_47V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.11e-166auxin response factor 10
Publications ? help Back to Top
  1. Yang ZB, et al.
    TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2889-904
    [PMID:25052716]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Zhang GZ, et al.
    Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(1-2): p. 77-93
    [PMID:26496910]
  4. Ye Y, et al.
    Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination.
    Plant J., 2016. 85(1): p. 3-15
    [PMID:26611158]
  5. Liu Z, et al.
    Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana.
    Plant J., 2016. 87(4): p. 391-402
    [PMID:27189514]
  6. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  7. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  8. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]