PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0001s0120.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

SBP

Protein Properties

Length: 822aa MW: 86354.5 Da PI: 6.8578

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0001s0120.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.7	2.2e-40	367	444	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++dl+ ak+yhrrhkvCe+hskap +++ g+eqrfCqqCsrfh l+efD +krsCrrrLa+hn+rrrk+++ Sphfalx0001s0120.1.p 367 CCQVEGCKTDLTPAKDYHRRHKVCEMHSKAPRCIAGGQEQRFCQQCSRFHVLTEFDGGKRSCRRRLAGHNRRRRKAHP 444 6**************************************************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.6E-34	362	429	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.462	365	442	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.35E-37	366	446	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.4E-31	368	441	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 822 aa Download sequence Send to blast
MDGSSLVKET LENTTSAAFS AISSSPPPEE VQEEVISGQC SHHPLVQFCE LDMAMAAADG 60 TFEQASIVNG GGDNCRSTTA WGEHQSLPTE DSGSMEGSGG GGDYSSTAAA TAAVRMEWDL 120 KTTNPCWEWE NITTMVYPVR QGGGDGEEDS RHVVTKLQAF DWAHVVCSSN VGSSVTTTSS 180 SSPLALKSSD VSMGLASSGT STPSGVSSVS SGVPGLAMNR GNAASHNTEL SSVIKSETVE 240 LTTASRRTPE SPIEHQQRPF VGFLGVQSCE HGEPENSASE NGGEDKKLLD GNQSAAAPSS 300 KQKGAFTGLK LGRQTYFKDS AAGVTAAGGV VQVVRERAAA SAGPICSPPP GKKRQQARSP 360 GGIQIPCCQV EGCKTDLTPA KDYHRRHKVC EMHSKAPRCI AGGQEQRFCQ QCSRFHVLTE 420 FDGGKRSCRR RLAGHNRRRR KAHPETHTTL SIKGLSPVPS DNSLTMEDNK QSIFLQHHRG 480 STSSSTSVDT NEYAGPLANS LKLSPWSGLG RSDDCKLAAS VESQSILSTL LRPTADHLLM 540 LSQSPKGRIA APKSSAPEMA ISPHQFMEGA LSPLGQGLSL SSSSAGLLGG FEPIHLGACS 600 QGAYSVSAVD SGCALSLLSS QAWVSHSSSC PPIQGIPLGL PQADTTLEQF MAGSNDSNYH 660 GPSFSHHSQL QPLGRSQTAQ QQQHCSVVEK LLPLYSRGLG SMETNYGHAG SGNQTIESNV 720 NNDGGQQHNN FLSGLGVYAG AHSMHTLLQT RHFGGLSSGT KANAHPTMDL MQALSTQVQS 780 LTNGSQGGGH SQSQPSSNGH NGEFSPLHPF RGSMYSSQQM L*

Sequence ? help Back to Top

Protein Sequence Length: 822 aa Download sequence Send to blast

MDGSSLVKET LENTTSAAFS AISSSPPPEE VQEEVISGQC SHHPLVQFCE LDMAMAAADG  60
TFEQASIVNG GGDNCRSTTA WGEHQSLPTE DSGSMEGSGG GGDYSSTAAA TAAVRMEWDL  120
KTTNPCWEWE NITTMVYPVR QGGGDGEEDS RHVVTKLQAF DWAHVVCSSN VGSSVTTTSS  180
SSPLALKSSD VSMGLASSGT STPSGVSSVS SGVPGLAMNR GNAASHNTEL SSVIKSETVE  240
LTTASRRTPE SPIEHQQRPF VGFLGVQSCE HGEPENSASE NGGEDKKLLD GNQSAAAPSS  300
KQKGAFTGLK LGRQTYFKDS AAGVTAAGGV VQVVRERAAA SAGPICSPPP GKKRQQARSP  360
GGIQIPCCQV EGCKTDLTPA KDYHRRHKVC EMHSKAPRCI AGGQEQRFCQ QCSRFHVLTE  420
FDGGKRSCRR RLAGHNRRRR KAHPETHTTL SIKGLSPVPS DNSLTMEDNK QSIFLQHHRG  480
STSSSTSVDT NEYAGPLANS LKLSPWSGLG RSDDCKLAAS VESQSILSTL LRPTADHLLM  540
LSQSPKGRIA APKSSAPEMA ISPHQFMEGA LSPLGQGLSL SSSSAGLLGG FEPIHLGACS  600
QGAYSVSAVD SGCALSLLSS QAWVSHSSSC PPIQGIPLGL PQADTTLEQF MAGSNDSNYH  660
GPSFSHHSQL QPLGRSQTAQ QQQHCSVVEK LLPLYSRGLG SMETNYGHAG SGNQTIESNV  720
NNDGGQQHNN FLSGLGVYAG AHSMHTLLQT RHFGGLSSGT KANAHPTMDL MQALSTQVQS  780
LTNGSQGGGH SQSQPSSNGH NGEFSPLHPF RGSMYSSQQM L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	5e-28	359	441	2	84	squamosa promoter binding protein-like 4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	2e-27	squamosa promoter binding protein-like 2

Link Out ? help Back to Top
Phytozome	Sphfalx0001s0120.1.p