PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0001s0083.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 400aa    MW: 43384 Da    PI: 8.5511
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0001s0083.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.3e-18245299256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ +++keq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Sphfalx0001s0083.1.p 245 RKKLRLSKEQSALLEDSFKEHSTLNPKQKNTLAKQLNLRPRQVEVWFQNRRARTK 299
                           778899***********************************************98 PP
2HD-ZIP_I/II122.81.7e-39245334191
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rlskeq++lLE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d l+ en+rL+ke  eLr 
  Sphfalx0001s0083.1.p 245 RKKLRLSKEQSALLEDSFKEHSTLNPKQKNTLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCERLKRCCDCLALENRRLQKELLELR- 332
                           69*************************************************************************************9. PP

           HD-ZIP_I/II  90 el 91 
                           ++
  Sphfalx0001s0083.1.p 333 AI 334
                           44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.74E-18232302IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-17234295IPR009057Homeodomain-like
PROSITE profilePS5007117.216241301IPR001356Homeobox domain
SMARTSM003891.1E-15243305IPR001356Homeobox domain
CDDcd000862.24E-16245302No hitNo description
PfamPF000463.8E-15245299IPR001356Homeobox domain
PROSITE patternPS000270276299IPR017970Homeobox, conserved site
SMARTSM003402.2E-16301344IPR003106Leucine zipper, homeobox-associated
PfamPF021836.5E-9301334IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MAATLLAEGK DAIREEVLKL RAMQANYFGG AAGAAMSLEV SKDLTLMLQQ PYNAAAAAAA  60
ARVNQDMMIT TSAVTASNHH DAGDAIAAAP ARQCPVQLDL LPLRPLSHPI TSSRAASPPQ  120
SYSTSSKLYF SWQPASVRSD SRSNSGSGNI REAGEPVEAA YSSRGGHGGA WPRNIDVNQI  180
PSMNGDCDDA PVISSSPSST AGGLKREREP MQQNMMFDLQ ELRDRPCEIS SRAAGSDDED  240
GGTTRKKLRL SKEQSALLED SFKEHSTLNP KQKNTLAKQL NLRPRQVEVW FQNRRARTKL  300
KQTEVDCERL KRCCDCLALE NRRLQKELLE LRAIKVAAPP AACLNMISQV DYYTRPLPAA  360
TLTMCPSCER VSTVADNRSS PHTVFTKPGF SHLVQSSAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243249TRKKLRL
2293301RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379716.11e-106homeobox-leucine zipper protein HAT4-like
SwissprotA2YW033e-63HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
SwissprotQ6YPD03e-63HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBLA0A2R6WPH01e-117A0A2R6WPH0_MARPO; Uncharacterized protein
STRINGPP1S42_217V6.11e-105(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-62homeobox from Arabidopsis thaliana