PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0001s0077.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 430aa MW: 46562.1 Da PI: 4.3955 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55 | 1.4e-17 | 102 | 155 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t eq++ Le+ Fe ++++ e++ +L+k+lgL+ rqV vWFqNrRa++k Sphfalx0001s0077.1.p 102 KKRRLTFEQVRSLERNFELENKLEPERKMQLSKELGLQPRQVAVWFQNRRARWK 155 4557899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 119.4 | 1.9e-38 | 101 | 193 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 ekkrrl+ eqv++LE++Fe e+kLeperK++l++eLglqprqvavWFqnrRAR+ktkqlE+dye+L ay++lk+e e++ +e+++L+ Sphfalx0001s0077.1.p 101 EKKRRLTFEQVRSLERNFELENKLEPERKMQLSKELGLQPRQVAVWFQNRRARWKTKQLERDYEVLSVAYNRLKTEFEAIVQEKDRLKC 189 69*************************************************************************************99 PP HD-ZIP_I/II 90 elke 93 e+++ Sphfalx0001s0077.1.p 190 EVHR 193 8875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-19 | 80 | 158 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.08E-19 | 91 | 159 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.119 | 97 | 157 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.0E-14 | 100 | 161 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.9E-15 | 102 | 155 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.03E-16 | 102 | 158 | No hit | No description |
PRINTS | PR00031 | 4.8E-5 | 128 | 137 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 132 | 155 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.8E-5 | 137 | 153 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.8E-13 | 157 | 197 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MTATSAMRSG FGTAQSAGTL MGGKETTSSD SLVAILASCS NMGGIQVGGG LGDHMMTVVG 60 CGDKRPFSSY PGASTFAGSP GEADQGGDED GGGDFSLHNV EKKRRLTFEQ VRSLERNFEL 120 ENKLEPERKM QLSKELGLQP RQVAVWFQNR RARWKTKQLE RDYEVLSVAY NRLKTEFEAI 180 VQEKDRLKCE VHRLSVKTEL PACDGVQEPS SVSESEITTT THTSDNAQVN SSVTTVKTES 240 AVIISEDQQE QHQLVENTTT RDSSQSTRLS PTVAADGSTQ KVVDQEPEQS TSADSNSSDI 300 LNVTDSPRTV NNCTTTHPPS SSVLVIPTLD QQQQLQTATN NELVAQAESA SFVVDSSLLD 360 GVEDDDLCGA AGHVMLSPQA VYQRPPMSIK LEDDCSNSSY PTAADDHSCI YFLSQLDDKT 420 GATPWWDWS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 157 | RRARWKTKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-40 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0001s0077.1.p |