PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0001s0072.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

LBD

Protein Properties

Length: 237aa MW: 24050.1 Da PI: 7.9055

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0001s0072.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	147.2	4.5e-46	9	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasn++kll++lp+++reda++sl+yeA+ar++dPvyG+vg i+ lq+q++q Sphfalx0001s0072.1.p 9 PCAACKFLRRKCTTECVFAPYFPPDQPHKFANVHKIFGASNITKLLNELPPHKREDAVNSLAYEADARVKDPVYGCVGAISLLQRQVAQ 97 7************************************************************************************** PP DUF260 90 lkaelallkee 100 l++ela +++ Sphfalx0001s0072.1.p 98 LQNELAIAHSD 108 ****99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.342	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.1E-45	9	106	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MASSSSSSPC AACKFLRRKC TTECVFAPYF PPDQPHKFAN VHKIFGASNI TKLLNELPPH 60 KREDAVNSLA YEADARVKDP VYGCVGAISL LQRQVAQLQN ELAIAHSDLA RYAGAGMVVG 120 PPAGAAQAGA AGPSSASSLG IGMGLSAGGN QSAGREQMLT REQLIDLARE PPQLTREQIM 180 ELARVGGGSY EAGLAALGLT GALGPLGPSY PSSRTGGGDH SGNGSGSAGG HISPAP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-60	8	113	10	115	LOB family transfactor Ramosa2.1
5ly0_B	1e-60	8	113	10	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00581	DAP	Transfer from AT5G63090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024356367.1	1e-107	protein LATERAL ORGAN BOUNDARIES-like isoform X1
Refseq	XP_024356368.1	1e-107	protein LATERAL ORGAN BOUNDARIES-like isoform X2
Refseq	XP_024356369.1	1e-107	protein LATERAL ORGAN BOUNDARIES-like isoform X2
Refseq	XP_024356370.1	1e-107	protein LATERAL ORGAN BOUNDARIES-like isoform X2
Refseq	XP_024356371.1	1e-107	protein LATERAL ORGAN BOUNDARIES-like isoform X2
Swissprot	Q9FML4	4e-61	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A2R6WTX8	1e-109	A0A2R6WTX8_MARPO; Uncharacterized protein
STRING	PP1S170_93V6.1	1e-107	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	2e-59	LBD family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0001s0072.1.p

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]