PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0001s0040.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 687aa MW: 74159.9 Da PI: 7.6055

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0001s0040.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.3	6.6e-14	435	485	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h Er+RR+ +N+ f++Lr+llP++ s K +K++++ + ++YI+ Lq Sphfalx0001s0040.1.p 435 QRESHIWSERQRRKGMNHLFSTLRSLLPQP----SSKTDKSTVVSEIIKYIQALQ 485 7999***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.80E-13	433	488	No hit	No description
PROSITE profile	PS50888	15.967	434	484	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.4E-15	434	505	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-11	435	485	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-16	435	508	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-10	440	490	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence Send to blast
MPSHRREYGA GTALQLHTLL PLAVATKTSP SCSRLARRSA AAAASVAVAP PPPAPPLPPH 60 QRTTMALLYP QQQISNCHDI ISASMESACF QVSQYATHHS SLQQGTHDQS LLQQQDRHHE 120 QTQQSSARGG SGIGAYAAAD RNCRLSSAAS GAGLDLLQHV EPQQQQQQRL ASSSSESSRS 180 RNLSGVVMAG ASTTTEQMDM DMDALDMSLQ LQLGDLQEWW PPIAASEEVV SSNNNNNHHQ 240 HALPLISNNS NIIPQQPHQR EREEREKTQN NNSSAVFVAA AAEAINKEQQ QEETSFDLES 300 WCAARSSIAG VQNLLNIDDN NNDNSNALPK ARSHVLSSSS RDQSCGGHNI AAAGATMVEP 360 MTPTIERGGS RGGSHQQHKG AGGRIISPCA AVTYPREGEK AANLTPPVVV AAAAVHRKKP 420 LGGSSSGCVK RAVSQRESHI WSERQRRKGM NHLFSTLRSL LPQPSSKTDK STVVSEIIKY 480 IQALQLQLDI LTKKRQQMLE ARALSQTVVP TVSLHHPMEP PKTSPAAAAA AVVTPENLTI 540 SLLDHQGNAH HGNHESSMLY VQQQQQQQAD LAAMSTNLNH PLQQQEIIQQ TDSCLQSFLG 600 ANVGLHICGS NAFITISSPR GQRGIFHRIL VTVQNQHLDV INAFISTSKA SIFHCLHCQA 660 LQGSDLSKEE LHTALQMVIT NYGQSI*

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence Send to blast

MPSHRREYGA GTALQLHTLL PLAVATKTSP SCSRLARRSA AAAASVAVAP PPPAPPLPPH  60
QRTTMALLYP QQQISNCHDI ISASMESACF QVSQYATHHS SLQQGTHDQS LLQQQDRHHE  120
QTQQSSARGG SGIGAYAAAD RNCRLSSAAS GAGLDLLQHV EPQQQQQQRL ASSSSESSRS  180
RNLSGVVMAG ASTTTEQMDM DMDALDMSLQ LQLGDLQEWW PPIAASEEVV SSNNNNNHHQ  240
HALPLISNNS NIIPQQPHQR EREEREKTQN NNSSAVFVAA AAEAINKEQQ QEETSFDLES  300
WCAARSSIAG VQNLLNIDDN NNDNSNALPK ARSHVLSSSS RDQSCGGHNI AAAGATMVEP  360
MTPTIERGGS RGGSHQQHKG AGGRIISPCA AVTYPREGEK AANLTPPVVV AAAAVHRKKP  420
LGGSSSGCVK RAVSQRESHI WSERQRRKGM NHLFSTLRSL LPQPSSKTDK STVVSEIIKY  480
IQALQLQLDI LTKKRQQMLE ARALSQTVVP TVSLHHPMEP PKTSPAAAAA AVVTPENLTI  540
SLLDHQGNAH HGNHESSMLY VQQQQQQQAD LAAMSTNLNH PLQQQEIIQQ TDSCLQSFLG  600
ANVGLHICGS NAFITISSPR GQRGIFHRIL VTVQNQHLDV INAFISTSKA SIFHCLHCQA  660
LQGSDLSKEE LHTALQMVIT NYGQSI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	1e-13	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0001s0040.1.p