PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0000s0777.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 958aa MW: 102230 Da PI: 4.7659

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0000s0777.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.6	1.3e-14	703	748	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h+++Er RR++ N++f+ L +++P+ kK +K +iL+ A+eYI++L Sphfalx0000s0777.1.p 703 NHKMAERDRRSKFNDKFSILSTIVPTT-----KKKDKLSILTNAIEYIHKL 748 7***********************9.....89************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	6.2E-10	17	170	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	14.322	699	748	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.28E-15	702	767	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-16	703	762	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-12	703	748	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.58E-13	703	753	No hit	No description
SMART	SM00353	1.1E-13	705	754	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 958 aa Download sequence Send to blast
MDQYAGSDDL ELVNWEERLQ ALMQIWPWIN YAVVWKLTPD KRALVWNTGY IDCNNDRSSQ 60 LLHGGRTDSD HSQRLAAIFY SVFKSCKFTN PSSGYAAKAF SRQSPLWWTS CTSPPLPTDP 120 RKEKFLQQAG IQTIVCLPEP KISEGDILYC LELASTALVM EASRTLEALQ AFLFDGSSTA 180 FPRSGGGLSS FDSSYGNLLL RSLNSCGEDA EGVDAQRILA AAAGGVVERT CSAASPEHLT 240 SASALALIPQ LAETNLGSDN VCFDDDDDPG SQACNPVTGW FNVTEQNLKF SAAEVLQQTA 300 FATDDDQVPR GVPRDREEMS LRATAQDGAQ APQLVALANR TTAASSNVVA GVSTTADMML 360 NLWASISSAE MIDEQTDQMM PGISSIIQRS AFDSLATAFE MDYHHHYPAK LTNFSDADAA 420 TVADEHHEMM SAVIAATTPF DNVVVGHSST AGYDQDLAFH LLNQTSTAAA ASHNPMSYDN 480 IMCCIEPSPA APSIHAASAG AAAPSAISRQ PGTALAAPAG ALVAGMLAAD QRGAESSPPS 540 AVIADQVMGI DATLQVSDLC NPFHQQQEVT SSKSASRKLS PFESSQLDPS RNSKYRRFND 600 NSLSDVQMIT PPVTTSEHSM IGLLKNLDLP SITESDRTTI RQISGLAAAP DQEQQQQELG 660 LNSSSSSRSP ALPAGSVTHL QELNFAAGWP QILEVEQAHI AYNHKMAERD RRSKFNDKFS 720 ILSTIVPTTK KKDKLSILTN AIEYIHKLKD QIAARSAENA GSSQSSTHQQ AVQAPADSVK 780 VEALGGLSLA TAVAAAGRAT TPDRRATSSA AGAVSVRVES VADLQQTAVG GVVAGDSDAA 840 ASRLVPKASL AIKVETKSKN PEILIQILNA VHDLRLEVGP VSSKLIHDRM HISVSALVPA 900 SSQQTMSWYC NEMQELLEKV LMNHSSINPV SLPLPVSSQS ADSEPQLDTM TITSNIV*

Sequence ? help Back to Top

Protein Sequence Length: 958 aa Download sequence Send to blast

MDQYAGSDDL ELVNWEERLQ ALMQIWPWIN YAVVWKLTPD KRALVWNTGY IDCNNDRSSQ  60
LLHGGRTDSD HSQRLAAIFY SVFKSCKFTN PSSGYAAKAF SRQSPLWWTS CTSPPLPTDP  120
RKEKFLQQAG IQTIVCLPEP KISEGDILYC LELASTALVM EASRTLEALQ AFLFDGSSTA  180
FPRSGGGLSS FDSSYGNLLL RSLNSCGEDA EGVDAQRILA AAAGGVVERT CSAASPEHLT  240
SASALALIPQ LAETNLGSDN VCFDDDDDPG SQACNPVTGW FNVTEQNLKF SAAEVLQQTA  300
FATDDDQVPR GVPRDREEMS LRATAQDGAQ APQLVALANR TTAASSNVVA GVSTTADMML  360
NLWASISSAE MIDEQTDQMM PGISSIIQRS AFDSLATAFE MDYHHHYPAK LTNFSDADAA  420
TVADEHHEMM SAVIAATTPF DNVVVGHSST AGYDQDLAFH LLNQTSTAAA ASHNPMSYDN  480
IMCCIEPSPA APSIHAASAG AAAPSAISRQ PGTALAAPAG ALVAGMLAAD QRGAESSPPS  540
AVIADQVMGI DATLQVSDLC NPFHQQQEVT SSKSASRKLS PFESSQLDPS RNSKYRRFND  600
NSLSDVQMIT PPVTTSEHSM IGLLKNLDLP SITESDRTTI RQISGLAAAP DQEQQQQELG  660
LNSSSSSRSP ALPAGSVTHL QELNFAAGWP QILEVEQAHI AYNHKMAERD RRSKFNDKFS  720
ILSTIVPTTK KKDKLSILTN AIEYIHKLKD QIAARSAENA GSSQSSTHQQ AVQAPADSVK  780
VEALGGLSLA TAVAAAGRAT TPDRRATSSA AGAVSVRVES VADLQQTAVG GVVAGDSDAA  840
ASRLVPKASL AIKVETKSKN PEILIQILNA VHDLRLEVGP VSSKLIHDRM HISVSALVPA  900
SSQQTMSWYC NEMQELLEKV LMNHSSINPV SLPLPVSSQS ADSEPQLDTM TITSNIV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46510.1	3e-09	ABA-inducible BHLH-type transcription factor

Link Out ? help Back to Top
Phytozome	Sphfalx0000s0777.1.p