PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0000s0772.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

MYB_related

Protein Properties

Length: 1080aa MW: 121415 Da PI: 4.8574

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0000s0772.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.3	1.1e-10	277	324	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqk 46 r rW++eE++ l +a +++G+g+Wk I + + +R+ q+k++++ Sphfalx0000s0772.1.p 277 RRRWSAEEEDALRRALQRFGPGCWKEIKENEPalANRSTVQIKDKFRL 324 78*******************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.226	274	330	IPR017930	Myb domain
SMART	SM00717	1.6E-8	276	328	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.01E-10	277	327	IPR009057	Homeodomain-like
Pfam	PF00249	9.3E-10	277	323	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-11	277	323	IPR009057	Homeodomain-like
CDD	cd11660	3.33E-16	278	326	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1080 aa Download sequence Send to blast
MFAKLVLTDE EKAVDEELGY PHGYAKLCRH AAAQLQGLLT PFTEGPPQRF LPYAPQTEDF 60 VKLKEWDSLF PVVAEGDRDP PNARKHAEEL WLQLDHLGNA GFDPAKFRVD AYGNVVYWNA 120 DPSSPLAWEV DHWYPHSRGG KTVVSNLRIV QWQANQRKKN RLEFLVPWWD LQHGVSINQF 180 LSAFASKNAD FRRRSFALFF AGGEDEKVAR EHVGECRPWP QEFREKKALF GLAAAAIVSP 240 LTNNNDIVKI GHISRGVFAS SEMVTATGNP ASGTPARRRW SAEEEDALRR ALQRFGPGCW 300 KEIKENEPAL ANRSTVQIKD KFRLMRGDWQ IGKENIAINT APNGQSEHGN RQSAATVNLQ 360 KELRVKILRE EEKREKEEDV AQLEETVITL RQQNEKERLA LLEFEDVLRK HKQRVEKQRR 420 WAETQSSYRL CLERMIRDTM HQSLAYKEQA RLNQAACNAL MARLDCQKAI CDAAEKDLIQ 480 RHAHREALAV TGGTAMKEMG RMSGLRGKDI VDVSSCVSLF ETNEEHEGEE VTEPDNDMDC 540 WNDGEDEKAN EVHKLQMQLC QSQALHQQLQ QQIEQEHLNN YLVEDGLGLK GRPKEAVNAS 600 ELTLYLDATA QDRQDKWVQL PESQGGCKAM FAGMEEETDF AKDENMSCKF HGVQDVAVMQ 660 QGIETEIYGV DPKGEQSFGD TEDALNVLSD NYGDDPPASE AVAEELLVLL LKESRPDYRQ 720 EHQKNVIVEQ SQSNAVAKDV RVHWGPRETY KHTGAHLLEQ VRLQMQMAGV SDGRVNDGQP 780 IGEQQEQFDE LLQQVLTTHV DRGQRNEAAA QQTPNFDDEE KWQIGKSNLD KWLQALLQKD 840 GDSAGSSPAN ESPLLGVVSP VLSTARGATC ENMDLEVGQD QDSLKRVGES MDKPKGLWGG 900 LVRKLSVKQQ TELSGHLEEE SDEEPIEVET KNTDENLTHV LNSLKNIMLN EEDDAKIVKP 960 KPFELRHAVT GGGGEADQLL QSATKPFPET ELTELHAEDS VAGCVLDTHL HSTERNSTIE 1020 TDTESLSSTN PDSQSMEGKD MLRMGLRSSL KAATIVWRKA VKKLETKLQE GLSAYPPLD*

Sequence ? help Back to Top

Protein Sequence Length: 1080 aa Download sequence Send to blast

MFAKLVLTDE EKAVDEELGY PHGYAKLCRH AAAQLQGLLT PFTEGPPQRF LPYAPQTEDF  60
VKLKEWDSLF PVVAEGDRDP PNARKHAEEL WLQLDHLGNA GFDPAKFRVD AYGNVVYWNA  120
DPSSPLAWEV DHWYPHSRGG KTVVSNLRIV QWQANQRKKN RLEFLVPWWD LQHGVSINQF  180
LSAFASKNAD FRRRSFALFF AGGEDEKVAR EHVGECRPWP QEFREKKALF GLAAAAIVSP  240
LTNNNDIVKI GHISRGVFAS SEMVTATGNP ASGTPARRRW SAEEEDALRR ALQRFGPGCW  300
KEIKENEPAL ANRSTVQIKD KFRLMRGDWQ IGKENIAINT APNGQSEHGN RQSAATVNLQ  360
KELRVKILRE EEKREKEEDV AQLEETVITL RQQNEKERLA LLEFEDVLRK HKQRVEKQRR  420
WAETQSSYRL CLERMIRDTM HQSLAYKEQA RLNQAACNAL MARLDCQKAI CDAAEKDLIQ  480
RHAHREALAV TGGTAMKEMG RMSGLRGKDI VDVSSCVSLF ETNEEHEGEE VTEPDNDMDC  540
WNDGEDEKAN EVHKLQMQLC QSQALHQQLQ QQIEQEHLNN YLVEDGLGLK GRPKEAVNAS  600
ELTLYLDATA QDRQDKWVQL PESQGGCKAM FAGMEEETDF AKDENMSCKF HGVQDVAVMQ  660
QGIETEIYGV DPKGEQSFGD TEDALNVLSD NYGDDPPASE AVAEELLVLL LKESRPDYRQ  720
EHQKNVIVEQ SQSNAVAKDV RVHWGPRETY KHTGAHLLEQ VRLQMQMAGV SDGRVNDGQP  780
IGEQQEQFDE LLQQVLTTHV DRGQRNEAAA QQTPNFDDEE KWQIGKSNLD KWLQALLQKD  840
GDSAGSSPAN ESPLLGVVSP VLSTARGATC ENMDLEVGQD QDSLKRVGES MDKPKGLWGG  900
LVRKLSVKQQ TELSGHLEEE SDEEPIEVET KNTDENLTHV LNSLKNIMLN EEDDAKIVKP  960
KPFELRHAVT GGGGEADQLL QSATKPFPET ELTELHAEDS VAGCVLDTHL HSTERNSTIE  1020
TDTESLSSTN PDSQSMEGKD MLRMGLRSSL KAATIVWRKA VKKLETKLQE GLSAYPPLD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	PP1S305_38V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Sphfalx0000s0772.1.p