PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0672.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 471aa    MW: 53800.5 Da    PI: 7.041
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0672.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016227249123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C+ C    +rk++L rH+r++
  Sphfalx0000s0672.1.p 227 FFCEFCLSFMKRKEQLARHMRKC 249
                           67*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541601.01E-2080158IPR016197Chromo domain-like
Gene3DG3DSA:2.30.30.2701.6E-3683153No hitNo description
PfamPF117172.2E-1884140IPR025995RNA binding activity-knot of a chromodomain
SMARTSM002980.006798156IPR000953Chromo/chromo shadow domain
CDDcd000243.70E-4103148No hitNo description
Gene3DG3DSA:2.30.30.2701.6E-36188238No hitNo description
PROSITE profilePS5172675.898193464IPR002717Histone acetyltransferase domain, MYST-type
SuperFamilySSF557294.48E-112194465IPR016181Acyl-CoA N-acyltransferase
Gene3DG3DSA:3.40.630.301.0E-72252394IPR016181Acyl-CoA N-acyltransferase
PfamPF018534.5E-84254431IPR002717Histone acetyltransferase domain, MYST-type
CDDcd043010.00339305363No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010224Biological Processresponse to UV-B
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0043995Molecular Functionhistone acetyltransferase activity (H4-K5 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MGSLEENAPA GLGQGIETVD GILKEEIPVA TLENGTNPMK DSANGLKHND GLVTSPTSSP  60
AAIIQTESAV KPSLRKRKPI SLPLEVGTRV LCRWRDGKLH PVKVIERRKL STGPDDYQYY  120
VHYNEFNRRL DEWANLEQLE LESVEADADE KVEDKAGGLK MTRHQKRKIE ETHAEEGHED  180
FDAASLREHE EFTKVKNISK IELGKYEIET WYFSPFPPEY SDCNKLFFCE FCLSFMKRKE  240
QLARHMRKCV LKHPPGDEIY RQGSLSMFEV DGKKNKIYGQ NLCYLAKLFL DHKTLYYDVD  300
LFLFYILCEC DERGCHMVGY FSKEKHSEEG YNLACILTLP PYQRKGYGKF LIAFSYELSK  360
KEGKVGTPER PLSDLGLLSY RGYWTRILLD ILKKHRGNVS IKELSDMTAI KTEDVISTLQ  420
SLDLIQYRKG QHVICADPKL LERHLKAAGR GGLEVDASKL IWTPYKEQGG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dnc_A1e-1221894681282Histone acetyltransferase KAT8
4dnc_B1e-1221894681282Histone acetyltransferase KAT8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378LRKRKP
Functional Description ? help Back to Top
Source Description
UniProtHistone acetyltransferase which may be involved in transcriptional activation. {ECO:0000250|UniProtKB:Q9LXD7}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024374032.10.0putative MYST-like histone acetyltransferase 1
SwissprotQ8LI340.0MYST1_ORYSJ; Putative MYST-like histone acetyltransferase 1
TrEMBLA0A2K1KNZ90.0A0A2K1KNZ9_PHYPA; Histone acetyltransferase
STRINGPP1S13_111V6.10.0(Physcomitrella patens)