PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0670.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 515aa    MW: 55869.8 Da    PI: 4.6507
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0670.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.8e-18211263456
                           -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +++++ +q++ Le+ Fe ++++  e++ +LAk+lgL+ rqV vWFqNrRa++k
  Sphfalx0000s0670.1.p 211 KRRLSFDQVRSLERNFELENKLEPEKKMQLAKELGLQPRQVAVWFQNRRARWK 263
                           4467789*********************************************9 PP
2HD-ZIP_I/II117.76.3e-38210300292
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           kkrrls +qv++LE++Fe e+kLepe+K++la+eLglqprqvavWFqnrRAR+ktkqlE+dye+L   y++lk+e e++ +e++eL+++
  Sphfalx0000s0670.1.p 210 KKRRLSFDQVRSLERNFELENKLEPEKKMQLAKELGLQPRQVAVWFQNRRARWKTKQLERDYEVLNCDYNKLKSELEAVLEEKRELEAK 298
                           9*************************************************************************************998 PP

           HD-ZIP_I/II  91 lk 92 
                           ++
  Sphfalx0000s0670.1.p 299 VR 300
                           86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-18202267IPR009057Homeodomain-like
PROSITE profilePS5007117.362205265IPR001356Homeobox domain
SMARTSM003892.7E-14207269IPR001356Homeobox domain
CDDcd000861.04E-15210266No hitNo description
PfamPF000464.1E-15211263IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-19213272IPR009057Homeodomain-like
PRINTSPR000311.6E-5236245IPR000047Helix-turn-helix motif
PROSITE patternPS000270240263IPR017970Homeobox, conserved site
PRINTSPR000311.6E-5245261IPR000047Helix-turn-helix motif
PfamPF021831.5E-11265303IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MSDLFAVPHL GVRSSSREGG IKVDDSSTSD RLLSCGLVPL GTPGQCIRTT DQDAGAGSCW  60
SDPAFLSSRG CGGGGGGGGA GAAAAGVQFL ATDDDQYNIT TAAHDFEAEM ANNGRRFESP  120
NAAMVMRNAS RSLTNTALLA ASCSSPADPL QAMSRSVGQQ LEEALVMGCG QKRSFYPTFF  180
EASVINEPGD DEDAAAADDY PCPHNNGELK KRRLSFDQVR SLERNFELEN KLEPEKKMQL  240
AKELGLQPRQ VAVWFQNRRA RWKTKQLERD YEVLNCDYNK LKSELEAVLE EKRELEAKVR  300
CLRSPGKAQP EEESGCEAGD VSKVTDTRAC KHPAAGTCNE PDQLKPEKVV EVSRSCREDV  360
KQQPRIGASS TGQTPASTSC RRKDGSASLE STSSEILDAE SPLTIDSTTL SLAPRSGDHD  420
HKIVRDSAQK CTDDMIADPK PNMEYHTEDD LCGGRVSCFS DPQRIAVKLE DETTEVPSFQ  480
DHQDSCNYLL TQVDEQGASL PAAWWNWPMS NTGP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257265RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-35homeobox 1