PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0000s0571.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 715aa MW: 77034.8 Da PI: 5.9798

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0000s0571.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23	1.4e-07	601	642	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + r RR+ri +++ L+ l+P+ K++ +++LekA++Y++ L Sphfalx0000s0571.1.p 601 AARVRRERISERLKALQLLVPNG-----DKVDMVTMLEKAINYVQCL 642 6799****************5.....5*************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.78E-8	590	647	No hit	No description
PROSITE profile	PS50888	13.929	593	642	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-12	597	656	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-10	598	652	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-9	599	648	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.2E-5	601	642	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence Send to blast
MEDGGLWQVC EATVNSSAAL LPQHTSMFGC MSASSSESCS LHAAAAATLG HFECCALPPP 60 LLLPQTTSSP FRSQWGFQYE SWMSPARVDE LYDMTLIAPS TLLDMSAAGG AAAAFEHAAM 120 SLPQPLPCPQ AAAIDLQDLA AGAWGHGMIN EAFQSSAEHQ QQHLIVATSG GGSAAAVVAA 180 SDMQQQQGGM MKDQYLHTVN SSSSSLPPFN YTNLQEAVEK TLESSLGSVC DKVWNNNNRV 240 TADYHQFGHV MAGADYSLIT NPMGSMFHSI STGSLMYLQN KTCCYSEAQV MTKLPPPSQT 300 SLQEIQKAGE PLMLASLPDP SLMKNITSAA ADDDDDDDDN DASSEVKNYT KNSTVSSVQK 360 QQLQNGNNSH VGNSLVPQPG LYVSSTTVVE SSCETLEASK LPAGNQTWTF TETSSEISSS 420 NKTQNSKPPG KVKVCSEEQQ QHQNFSNGFQ RTPPVDQPVS ITKWLPQIVA LPPPPGPPPL 480 LPLEAKRALP PKCALPPLTV VKCALPRSTN HGRVASNARK RPLWPANTNN MINGSPKKKP 540 IAKWPGVELG CSRLEAVSTL AHHTVTQNTS NYNARALGPA LNTNLKPRAR QGSANDPQSI 600 AARVRRERIS ERLKALQLLV PNGDKVDMVT MLEKAINYVQ CLELQIRMLK DDTLWPKALG 660 ALPNTLQEFL ELAGPELAAL QEEEQKRKKK RMESVIKEDD PMSSPTPSSD NNTE*

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence Send to blast

MEDGGLWQVC EATVNSSAAL LPQHTSMFGC MSASSSESCS LHAAAAATLG HFECCALPPP  60
LLLPQTTSSP FRSQWGFQYE SWMSPARVDE LYDMTLIAPS TLLDMSAAGG AAAAFEHAAM  120
SLPQPLPCPQ AAAIDLQDLA AGAWGHGMIN EAFQSSAEHQ QQHLIVATSG GGSAAAVVAA  180
SDMQQQQGGM MKDQYLHTVN SSSSSLPPFN YTNLQEAVEK TLESSLGSVC DKVWNNNNRV  240
TADYHQFGHV MAGADYSLIT NPMGSMFHSI STGSLMYLQN KTCCYSEAQV MTKLPPPSQT  300
SLQEIQKAGE PLMLASLPDP SLMKNITSAA ADDDDDDDDN DASSEVKNYT KNSTVSSVQK  360
QQLQNGNNSH VGNSLVPQPG LYVSSTTVVE SSCETLEASK LPAGNQTWTF TETSSEISSS  420
NKTQNSKPPG KVKVCSEEQQ QHQNFSNGFQ RTPPVDQPVS ITKWLPQIVA LPPPPGPPPL  480
LPLEAKRALP PKCALPPLTV VKCALPRSTN HGRVASNARK RPLWPANTNN MINGSPKKKP  540
IAKWPGVELG CSRLEAVSTL AHHTVTQNTS NYNARALGPA LNTNLKPRAR QGSANDPQSI  600
AARVRRERIS ERLKALQLLV PNGDKVDMVT MLEKAINYVQ CLELQIRMLK DDTLWPKALG  660
ALPNTLQEFL ELAGPELAAL QEEEQKRKKK RMESVIKEDD PMSSPTPSSD NNTE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	4e-25	RHD SIX-LIKE 1

Link Out ? help Back to Top
Phytozome	Sphfalx0000s0571.1.p