PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0358.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 477aa    MW: 52698 Da    PI: 6.7904
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0358.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.2e-08271317455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h  rEr RRd++  ++++L +llP        K + a+i+e A++ +k+Lq
  Sphfalx0000s0358.1.p 271 EHILRERHRRDDMTIKYSTLESLLPAG-----SKRDRATIVEDAMKLVKDLQ 317
                           6999*********************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.036267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-8270325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-6271317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-10271331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.70E-6272321No hitNo description
SMARTSM003532.7E-6273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MDMSRGVPLL ALEEQMDTGD AAGFATFHSS SVLWCDSAGR PPPSSCGAAA AHHQVEDDMM  60
TGSLVAAPSS FTWLQQSSTH GLPLSEVEIE RNISKILEEF PEISKDPLFP AADHNIVDSC  120
KSMLAVDGTP LSSVILQMQP QPSFEISASI RKPADLAHSL QMSSYEPIPN HAPGEQYHHG  180
LSPHSRTIVP IDHFKPVLSS SIAVDIQPEA DHHPAGESRN RAKRCTKINT ADTGDDPMQQ  240
QRPSKKKPQP PMKFADCTNQ TSWTRAADQA EHILRERHRR DDMTIKYSTL ESLLPAGSKR  300
DRATIVEDAM KLVKDLQHRR EKLLKKGSGR RKPPVVSNQP RMDIHIQEVM LQFTMPAIKH  360
SGTGDSSSPM SLSMQESQLN ESTEVKNSCV RDCFVHSDLL DEIMIEMMCK PRPNFRSTLL  420
QAVESQNLEL IRCTITKTPI GMICIIVAKL QQQDHAESPR SHASIVQALK TALQVV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.19e-09bHLH family protein