PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0329.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WOX
Protein Properties Length: 298aa    MW: 32842.7 Da    PI: 5.9108
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0329.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.9e-21118178257
                           T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                           r+R+t++++ql++Le+lFe+ n +ps+++++e++++l    ++ e++V++WFqNr+a+ k+
  Sphfalx0000s0329.1.p 118 RQRWTPSQNQLQILERLFEQgNGTPSKQRIKEITTELmqhgHVGETNVYNWFQNRKARAKR 178
                           89*****************99**************************************97 PP
2Wus_type_Homeobox95.74e-31117180265
     Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                           +r+RWtP+++Q++iLe+l+++G  tP+k++i++it+eL ++G+++++NV++WFQNrkaR ++kq
  Sphfalx0000s0329.1.p 117 VRQRWTPSQNQLQILERLFEQGNGTPSKQRIKEITTELMQHGHVGETNVYNWFQNRKARAKRKQ 180
                           689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-16111182IPR009057Homeodomain-like
SuperFamilySSF466898.13E-17112182IPR009057Homeodomain-like
PROSITE profilePS5007114.56114179IPR001356Homeobox domain
SMARTSM003891.6E-12116183IPR001356Homeobox domain
CDDcd000861.63E-12118180No hitNo description
PfamPF000461.6E-18118178IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGSVGSGLQQ QLLPSAPLVG ETMGDNTSSL GEALDPTSFS QQQLCTRRSG QVVMTEEQLE  60
ALRRQISVYA TICQQLVEMH KASLSKELSA PGIMATGVQP SSVMDQVTMS PMHRATVRQR  120
WTPSQNQLQI LERLFEQGNG TPSKQRIKEI TTELMQHGHV GETNVYNWFQ NRKARAKRKQ  180
QLLPKDDGSE VDTDAESSQV KQFRSEPDPR HGGDSGGIVD HPDVGRSSDG RAQTGLDPWN  240
GNVYQPGAAT AVLLEQPEAD IQRDLGAFTR TPSFQLDNLQ GFKEECNRWQ HCPPTMC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385206.11e-77WUSCHEL-related homeobox 8-like
RefseqXP_024385208.11e-77WUSCHEL-related homeobox 8-like
RefseqXP_024385209.11e-77WUSCHEL-related homeobox 8-like
TrEMBLA0A2K1K3413e-76A0A2K1K341_PHYPA; Uncharacterized protein
STRINGPP1S224_106V6.16e-76(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.17e-46WUSCHEL related homeobox 13