PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0000s0307.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 804aa MW: 85028.4 Da PI: 4.9117 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.6 | 5.4e-09 | 605 | 652 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Sphfalx0000s0307.1.p 605 SHSLAERVRREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 652 8*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.16E-17 | 599 | 670 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.13E-10 | 599 | 656 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.9E-17 | 601 | 668 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.701 | 601 | 651 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-6 | 605 | 652 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-10 | 607 | 657 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 804 aa Download sequence Send to blast |
MAPADLSYSS GQVELLQCPA NVGIPAASSR YSEAVIIAPV VNSSSSTLQG ASFSDGSEHR 60 SLLSGWQALE LQLSARVAEN AASGSTSAAN NSSFAQSDQE VISSSVNGSA SSLQLGRSRS 120 FSASDQQKLL GSTMTSGDWQ QLLDSASNRT SFRSSTSGNL AVPASTGQQQ MLNSSVQAGA 180 GTESLGGPGH SCTSRFVTGD SSLRAAGRAA GRGGGSVGHS AIFDSKLVLS TVACSRSWNS 240 LEQASCGISV EPTKGALALQ GVGLATSHCL EQFSSDPAFA ERAAKYSSFG NAGTYSSSQM 300 ISQPLPFMDS ERSRAAARVG SISRAPQPES EIKISRASSF PTSGVKLNVA ASSSRSHKVE 360 SVINNPLPQD THEAAEQRQD DHAQDPDQVQ PGARSTGDQE LPGAEYSGAG NQLEDEEARI 420 VDTAGATEND NMDHVSKAGQ GTTSREEDFS CTADQEHAAA CRSVESSDDT GNKRKMDIQY 480 SDAGKETNTG YFTDSKVADE SDEDSRPKRY KRLGEESKAA TPLPDQRLDT IKTTSGCFFK 540 QADQRSSSEN SGDSGASPCR GRNDLLTMQK ENVQPMSVSS EPLAASCKLQ DYVHVRARRG 600 QATDSHSLAE RVRREKISER MKYLQDLVPG CSKVTGKAVM LDEIINYVQS LQHQVEVLSM 660 KLASVNPQLD YNLDCIFNKE NANLQMLQSG ASSIVGPEPS STYGLHLPLT PPHIANGLEF 720 QSLGTMDSCH LRRTISAPPT GVPSVPNLDT FGDDATQMSI EWDGELQSML QMGFGQATGA 780 TSSLLLEGFN NCQLPAGHMK VEL* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 203 | 212 | RAAGRAAGRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G07340.1 | 7e-51 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0000s0307.1.p |