PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0000s0278.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | CAMTA | ||||||||
Protein Properties | Length: 1211aa MW: 135605 Da PI: 5.8279 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 171.1 | 1.6e-53 | 23 | 140 | 3 | 117 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahs 88 +e ++rwlk+ e++++L+n++ h ++l ++ +p sgsl+L++r ++ryfrkDG++w+kkkdg+tvrE+he+LK+g+v+vl+cyYah+ Sphfalx0000s0278.1.p 23 TEaQNRWLKPVEVCEVLNNYQIHGFKLnpIAPVKPASGSLFLFDRNVLRYFRKDGHNWRKKKDGRTVREAHERLKIGNVDVLHCYYAHG 111 4449*******************9998667899******************************************************** PP CG-1 89 eenptfqrrcywlLeeelekivlvhylev 117 e+n +fqrrcywlL+ ++++ivlvhy+ev Sphfalx0000s0278.1.p 112 ETNLNFQRRCYWLLDPSMDHIVLVHYREV 140 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 76.472 | 18 | 146 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.7E-66 | 21 | 141 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.4E-49 | 24 | 139 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 2.1E-8 | 561 | 672 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 2.29E-14 | 584 | 671 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 7.15E-20 | 772 | 881 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 5.42E-15 | 776 | 879 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 1.3E-20 | 780 | 883 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 4.2E-7 | 781 | 848 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 19.651 | 787 | 891 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.381 | 820 | 852 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 6.1E-6 | 820 | 849 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 3.19E-7 | 978 | 1056 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00612 | 0.24 | 989 | 1002 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.094 | 1004 | 1026 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.212 | 1005 | 1034 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0018 | 1008 | 1025 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.86 | 1027 | 1049 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.029 | 1029 | 1056 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.6E-4 | 1031 | 1049 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1211 aa Download sequence Send to blast |
MASARRPRSQ PLQPKTNIED IVTEAQNRWL KPVEVCEVLN NYQIHGFKLN PIAPVKPASG 60 SLFLFDRNVL RYFRKDGHNW RKKKDGRTVR EAHERLKIGN VDVLHCYYAH GETNLNFQRR 120 CYWLLDPSMD HIVLVHYREV DELGRIVISD MHSTPPSHVP SPPEGSRSSS MSIAHEHEGG 180 DAGEFEEVSN VSPAEACRSV LNSCITQLEQ DPPLQQKPGT LEVRPGWTVL DSLSMSRNSE 240 TLRPALAGIE RMLDSPGVFP LGVSQSSLLL PSPLGPEHLN REQQQSEYSL PMQGSSEESV 300 NSSAESRTKS NGVGLQPFTK EEELDIVEWK ELLGNTQSNQ KVSSNQTGGV GGSATSDEVV 360 RSMDGLNWTD MLEQCTTPET HQALLDLDQS ENEPVVQLVN DFSQQEGLSY LTQVLSPTVP 420 TPNVQCQDPL RKENAPKAHQ KQFPLTRVDL QNTKARWDGE ILDLEHSTLV NIQNSEVQSL 480 KEAAGNKNME VESLTKNLEL DSFMKESSVD DLELDKFKKL NSFGRWMSTQ LSDNSESLLM 540 DSGWPSTPVL EDRGVGEDVN GISVELQAES GVNTSVTLAQ RYSIIDFSPG YGYSSEETKV 600 IVTGMFIGDN SSRVSDFRWH CMFGEIEVPA ELLGGEALRC NAPAQAAGRV AFYITCGDRQ 660 AHSEICEFEY RNATRADSKP VNFEHHSENE MLLKIHLAHM LLEVVDSPKT HNEGDSLKQS 720 SHSDFLNTMC THDEWLYLEL LATTPGDLQT LDFHEQLLQM LLKSHMQRWL QCRIEDEGKG 780 PAVLNEKGQG VLHMAAALGY HWAIAPLMSA GLPINFRDVH GWTALHWAAW YGQEEAIVHL 840 LEAGADPAAV TDPTVTNTAG QSAADLAATN GHVGISGFLA ESSLRARLSS MTVSEDPIDI 900 ALSCIAGDNA VAKLAHRESL KRSVVRLEDQ RSLEASIEAL RNAARSKALI QAAFRQHSFQ 960 KRENDTLASM QSDEYDLTTI ELQAWITANA AKKIQKAYRG HHGKQQLAAI RIQNKFRGWR 1020 ARRDFLSFRQ HIVKLQAHVR GNLVRKRFKK LLWSVSIVEK AILRWLRRRH GLRGFKNEFC 1080 LPDNDNDEFL REGRKRTEVA LEIAVTRVEG MVPSSTGRAQ YLRLREKSLE SHQKGKSPEP 1140 EAHQLMQSSK PEMQQQTQSC QVSIPDYVQA SDDQFMSFRE SEHQGQNTQV PPPHVFPDTT 1200 DDALMIFTVE * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 917 | 922 | ESLKRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 1e-108 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0000s0278.1.p |