PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0000s0256.4.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 669aa MW: 71863.4 Da PI: 5.0285

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0000s0256.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	6.1e-09	502	549	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P++ s K a +L ++++Y++sLq Sphfalx0000s0256.4.p 502 SHSLAERVRREKISERMKFLQDLVPSC----S-KlTGRAVMLDETINYVQSLQ 549 8***********************9....4.5489*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.98E-11	496	553	No hit	No description
SuperFamily	SSF47459	4.06E-15	496	558	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-15	498	556	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.307	498	548	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.4E-6	502	549	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.0E-10	504	554	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
MSSFMAYCTA QAAPLEKSTT MPSHKLQPSA AGAGAAAGYV HMISSHSCSG ILQEPSSRRS 60 SQYSSYDLHP ASVYVATTPC SLSNSLPCSD DLSGDKTMVV QGEELSPPPA LLSKTTTTTC 120 GGNRSWSSSS LDYPAAVAAS FPSSVSLQNY CDDSSNNGGG QDWTQFSNSH ATFFSNGGPT 180 STHHFSSQAR CCWQPGFAGL NNIDDNLPPP PTGTNSSSTL NAAASASRQR LLSTIHDPSF 240 ASRFSYVNNN NSGYTCSHEQ QRSHSLSAAS EYTFFDGQDG FNAERESAIQ GKSTAEEEAD 300 HHLDCRQPGL LQAEFMERET EDISATVAFE YDEEGAAAAA GQGRNSSSFR LSQNAAWESA 360 FFVPRDGGAG ARNPGGGMGK RKTTPPGPPQ EEQQNNDHVY GTIRLEPCCF GGRDDAELLD 420 SSDEAAAAKR FKAGELGDSS AQSFKAEQST TSNHSGDESG SPHSMEDLNH HGLNLPLPPP 480 DHQAPTQDYI HVRARRGQAT DSHSLAERVR REKISERMKF LQDLVPSCSK LTGRAVMLDE 540 TINYVQSLQH QVEMVQSCAS PPTILMNSDH IVPHEQHPFQ EQYEVPFQLA SACATDFRDL 600 ELAVSEANKI HISSAPLFAC ITSMDSHGEP LSQTSNICES ELQSVVQMGI SADWDSLQNV 660 IKSHPKHG*

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

MSSFMAYCTA QAAPLEKSTT MPSHKLQPSA AGAGAAAGYV HMISSHSCSG ILQEPSSRRS  60
SQYSSYDLHP ASVYVATTPC SLSNSLPCSD DLSGDKTMVV QGEELSPPPA LLSKTTTTTC  120
GGNRSWSSSS LDYPAAVAAS FPSSVSLQNY CDDSSNNGGG QDWTQFSNSH ATFFSNGGPT  180
STHHFSSQAR CCWQPGFAGL NNIDDNLPPP PTGTNSSSTL NAAASASRQR LLSTIHDPSF  240
ASRFSYVNNN NSGYTCSHEQ QRSHSLSAAS EYTFFDGQDG FNAERESAIQ GKSTAEEEAD  300
HHLDCRQPGL LQAEFMERET EDISATVAFE YDEEGAAAAA GQGRNSSSFR LSQNAAWESA  360
FFVPRDGGAG ARNPGGGMGK RKTTPPGPPQ EEQQNNDHVY GTIRLEPCCF GGRDDAELLD  420
SSDEAAAAKR FKAGELGDSS AQSFKAEQST TSNHSGDESG SPHSMEDLNH HGLNLPLPPP  480
DHQAPTQDYI HVRARRGQAT DSHSLAERVR REKISERMKF LQDLVPSCSK LTGRAVMLDE  540
TINYVQSLQH QVEMVQSCAS PPTILMNSDH IVPHEQHPFQ EQYEVPFQLA SACATDFRDL  600
ELAVSEANKI HISSAPLFAC ITSMDSHGEP LSQTSNICES ELQSVVQMGI SADWDSLQNV  660
IKSHPKHG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	2e-35	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0000s0256.4.p