PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0234.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 238aa    MW: 26989.2 Da    PI: 9.4349
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0234.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042163182322
                           ETTTTEEESSHHHHHHHHHH CS
               zf-C2H2   3 CpdCgksFsrksnLkrHirt 22 
                           C+ Cg sF +   + +H+r+
  Sphfalx0000s0234.1.p 163 CSTCGPSFEDMAKYSSHLRK 182
                           ******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF029921.8E-581205IPR004242Transposon, En/Spm-like
PROSITE profilePS501578.621161190IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVWHKEHRSE PGVMRLPVDS HAHKHVESTW PEFEQDPKHV RLGLASDGVS PHSLGGKGRP  60
TSVWPVVVMN YNLPPWLSMK KRFLLLSLII PGPSKVKNLD TYLALVVDEL KTLWDGVWAY  120
DGRKTTGGIP RVFKLRAICM WTMHDYPGFG FISGLQTQGY KACSTCGPSF EDMAKYSSHL  180
RKIVYLGQTK FLPLGHDMRS DPLLFSSFDM PYGDERDIPK ATTFAYWRDV ANRFYGV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-