PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0000s0200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C2H2 | ||||||||
Protein Properties | Length: 426aa MW: 47577.1 Da PI: 7.1153 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.5 | 2.6e-06 | 262 | 281 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r nL+ H+ Sphfalx0000s0200.1.p 262 FSCHVCSKTFNRYNNLQMHM 281 89*****************9 PP | |||||||
2 | zf-C2H2 | 14.2 | 0.00013 | 346 | 368 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k+F + + ++H +++ Sphfalx0000s0200.1.p 346 FVCRKCSKTFAVRGDWRTHEKNC 368 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.03E-7 | 262 | 284 | No hit | No description |
Pfam | PF13912 | 2.9E-4 | 262 | 281 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.4E-4 | 262 | 281 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.23 | 262 | 284 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.658 | 262 | 289 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 264 | 284 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 309 | 341 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.4E-5 | 333 | 366 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.03E-7 | 341 | 366 | No hit | No description |
SMART | SM00355 | 43 | 346 | 366 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MSWTCDHEQG TSVPVPQSLS SIRHAQPVQA LCEEWWQLQP DTSARWPTHV GAIDPFTDMS 60 LWPSGTTGST RLNSDISTAP DSPSTCTIPR FHTLDHPHTC SCLRHSKIQH FYEKEHRLYN 120 RQRSCESEAG PSPLQRSLPF LSLSPPTADD RRPDVEDLQA QRCYPAARPA AELVPPAPDS 180 NACREYCDDN DVTVALHIGP PSSHDACMEG ATQRDRPSGH LLGDTEFKDS AHITEGVGRL 240 LLSEGQYWIP TSAEILVGPT QFSCHVCSKT FNRYNNLQMH MWGHGSQYRK GPESLRGTQP 300 TAILRLPCYC CALGCRNNIA HPRSKPLKDF RTLQTHYKRK HGIKPFVCRK CSKTFAVRGD 360 WRTHEKNCGK LWYCTCGSDF KHKRSLKDHI RAFGDGHATH GGLDSCEDEN DPAVSEDDAD 420 HDVSG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024385058.1 | 1e-133 | zinc finger protein WIP6-like | ||||
Refseq | XP_024385059.1 | 1e-133 | zinc finger protein WIP6-like | ||||
Swissprot | Q9SVY1 | 1e-106 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A2K1K471 | 1e-132 | A0A2K1K471_PHYPA; Uncharacterized protein | ||||
STRING | PP1S203_59V6.1 | 1e-133 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-109 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0000s0200.1.p |
Publications ? help Back to Top | |||
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