PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0000s0167.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | DBB | ||||||||
Protein Properties | Length: 324aa MW: 34923.5 Da PI: 5.4045 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.4 | 5.3e-07 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e+++++ C ++ lC dC + H H++vpl Sphfalx0000s0167.2.p 4 QCDVCESNKATVICCADEAALCTDCDTRVHAAnklankHQRVPL 47 7******99*********************66889999999986 PP | |||||||
2 | zf-B_box | 31.4 | 3.8e-10 | 53 | 94 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +++C+ ++ek +fC +++ llC+dC l++H+ H+ Sphfalx0000s0167.2.p 53 APRCDICQEKSGFFFCVEDRALLCRDCDLSIHSAnslssrHK 94 789*****************************6567777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.409 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.48E-9 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 1.8E-5 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.1E-10 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.499 | 51 | 98 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 7.4E-18 | 51 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.3E-8 | 53 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.97E-11 | 54 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MKIQCDVCES NKATVICCAD EAALCTDCDT RVHAANKLAN KHQRVPLMAP TDAPRCDICQ 60 EKSGFFFCVE DRALLCRDCD LSIHSANSLS SRHKRFLIPG IRVAWKALTV QEEPDAASEE 120 TPQFSLPTSK TSGMMNPVMS GRLSSTAQPP LSSSPVNHPM PQSKNQGGFV PKVGEVMGTS 180 LSTGPQSGSG TLRKSSITEF LTEATSGWRV DELLNLADLA EGYNAANVGS SKADVANFGD 240 FDWTADFSLF DEETLCEVPQ LPSPPTASGL SRSTRMIGTV KTVKQEVALV PDFGDAFTVP 300 NLHLDVSPPS SPLLKRRRSY YDM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024401288.1 | 1e-104 | B-box zinc finger protein 24-like | ||||
Refseq | XP_024401289.1 | 1e-104 | B-box zinc finger protein 24-like | ||||
TrEMBL | A0A176VIM5 | 1e-106 | A0A176VIM5_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A2R6WRC2 | 1e-106 | A0A2R6WRC2_MARPO; Uncharacterized protein | ||||
STRING | PP1S98_84V6.1 | 1e-103 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 1e-54 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0000s0167.2.p |