PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0161.3.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 853aa    MW: 93275 Da    PI: 5.9617
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0161.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.4e-182178457
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            ++t+eq+e+Le +++++++ps  +r++L k +    +++ +q+kvWFqNrR +ek+
  Sphfalx0000s0161.3.p 21 YVRYTNEQVEALEHVYHECPKPSSIRRQQLVKDCpilaHIEPKQIKVWFQNRRCREKQ 78
                          6789****************************************************97 PP
2START144.88.5e-461833892203
                           HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS
                 START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 
                           +aee+ +e+++ka+ ++  W +++ +++g+  + +++ s+++ g a+ra+ +v  ++   v+e+l+d++ W  ++ + ++l   ++g  
  Sphfalx0000s0161.3.p 183 IAEETVTEFISKATGTAIDWIQLPGMKPGPHAIGIVAISHGCLGVAARACSLVGLEPS-KVAEVLKDRPSWLPDCHRLSILSSFTTGng 270
                           7899******************************************************.9999999999******************** PP

                           EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
                 START  89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                           g+++l++++++a+++l+p Rdf+++Ry+  l+    vi+++S++   + p     +s+vRae lpSg+li p+++g++ +++v+h+dl+
  Sphfalx0000s0161.3.p 271 GTVELIYTQMYAPTTLAPpRDFYTLRYTTILENRNMVICERSLSGAHEGPMlppVQSFVRAEILPSGYLISPCEGGGCIIHIVDHMDLQ 359
                           *********************************************99999888899********************************* PP

                           SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS
                 START 174 grlphwllrslvksglaegaktwvatlqrq 203
                             +++++lr+l++s+++ ++kt+ ++l+++
  Sphfalx0000s0161.3.p 360 PCSVPEVLRPLYSSSAILAQKTTIRALRHL 389
                           ***********************9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.4E-151783IPR001356Homeobox domain
CDDcd000868.88E-162080No hitNo description
SuperFamilySSF466891.28E-162081IPR009057Homeodomain-like
PfamPF000461.2E-152178IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-172278IPR009057Homeodomain-like
PROSITE profilePS5007114.7382379IPR001356Homeobox domain
Gene3DG3DSA:3.30.530.202.1E-20179365IPR023393START-like domain
CDDcd088751.84E-69180390No hitNo description
PROSITE profilePS5084822.815180374IPR002913START domain
SuperFamilySSF559611.36E-34182389No hitNo description
SMARTSM002341.7E-30182392IPR002913START domain
PfamPF018527.8E-43183389IPR002913START domain
PfamPF086702.5E-43710851IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MQQQEDHHYS GMDSFIMCGK YVRYTNEQVE ALEHVYHECP KPSSIRRQQL VKDCPILAHI  60
EPKQIKVWFQ NRRCREKQRQ DSSRLLSVNA KLAALNKLLM EENERLSKHS LQLTLENHIL  120
RQELQQMPAA SLGGIRNQLD QAALASTETS SDSVVSGGGL HPQATPQHSP QAPSPAADEL  180
LSIAEETVTE FISKATGTAI DWIQLPGMKP GPHAIGIVAI SHGCLGVAAR ACSLVGLEPS  240
KVAEVLKDRP SWLPDCHRLS ILSSFTTGNG GTVELIYTQM YAPTTLAPPR DFYTLRYTTI  300
LENRNMVICE RSLSGAHEGP MLPPVQSFVR AEILPSGYLI SPCEGGGCII HIVDHMDLQP  360
CSVPEVLRPL YSSSAILAQK TTIRALRHLQ GLAQEASGDN LPQNAQQPAA LRTLSHRLSR  420
GFNQAVNGFL EDGWAATVSD DMDDVTVMIN ESPTTKCGQF GSEQLLCTLG GGILCAKASM  480
LLQNVPAALL IQFLREHRSE WADCDIDAHA AAAFHNTTHS DTTGHYRLSL PLAKSSEQEE  540
ILEVMKLEQN AGDANGIHMR DNFVLQLCSG IDKNAVGVCS QLVFAPVDVT LSDDDPLLPS  600
GFCVIPLDCH IVGGSGLSRT HDLTSTLEGG PEVTGLRTHE TGTVSSNHLR SVLMIAFQFV  660
YEAQTRETCA AVAHQYVCSV VASVQRVAIA LAPAHPAPRQ SPTSANAAVL ARHILQSYRL  720
NLGIDLVEID AGDDDSQFEI FWQHSDAILC CAWKGFPQFL FANRAGLNML ETTSGALQDM  780
LWEKTLDEEG QKSIYADFTR VLQQGYAYLP AGVRISSTGR RVNYDKALAW KVVAKDDSIQ  840
CIAFLFMNWS FS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024399215.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024399216.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024399218.10.0homeobox-leucine zipper protein HOX32-like isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A0Y0G9Y60.0A0A0Y0G9Y6_9BRYO; C3HDZ1 (Fragment)
STRINGPP1S15_11V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]