PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0124.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 671aa    MW: 73268.1 Da    PI: 6.8634
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0124.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21.1e-06342363526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            C  f + G C++G++CkF H+
  Sphfalx0000s0124.1.p 342 VCFEFVKQGSCSRGETCKFKHD 363
                           57778999*************7 PP
2zf-CCCH17.47.7e-06416434826
                           GGGGTS--TTTTT-SS-SS CS
               zf-CCCH   8 ffartGtCkyGdrCkFaHg 26 
                           +f+r G+C +G+ C+F+H+
  Sphfalx0000s0124.1.p 416 DFFRKGQCERGSDCRFSHS 434
                           67888*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.21.101.1E-48216IPR029052Metallo-dependent phosphatase-like
CDDcd073802.45E-4711244No hitNo description
SuperFamilySSF902296.28E-5335363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.225337365IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4339364IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4341363IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-4342363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582369397IPR000571Zinc finger, CCCH-type
SMARTSM003560.12370396IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-5374399IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4375399IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.657408436IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-4410435IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-5412439IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-5413440IPR000571Zinc finger, CCCH-type
SuperFamilySSF541978.13E-10445552IPR011146HIT-like domain
PfamPF046776.6E-35448560IPR006768Cwf19-like, C-terminal domain-1
Gene3DG3DSA:3.30.428.107.3E-7450555IPR011146HIT-like domain
PfamPF046762.4E-11584664IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MSGNKEAPRI LLCGDVNGHL HALYKRVLAV NKSNGPFDAL LCVGQFFPRT PDGIEEMEPY  60
FTLAKPIPLP TYFIGDYGEG AAALLAPAKA KAAETGIPMD GIRICDNLLW LKGSGILNLK  120
GLRVAYLSGK HSAELYQNAK AAAAAGAHHE DDVDTLRAFA DDPSITDLFL SNEWPQGILA  180
EADLSVVPEG IDRMTTGSTI SAELAKELKP RYHFAGSEGV FYAREPYLNT GVTHTTRFIG  240
LAAVGNDKKQ KFLHALSPTP ASAMLSSELA VRPPNTTISP YKMGTHKSSN NTTPSRPGLK  300
RDLVHSTSIT TTTESPANEG QYWRYDVNQG KRQRSDDGGN RVCFEFVKQG SCSRGETCKF  360
KHDLGNGTPI PKGACFDFIS KGRCERGADC RYRHSLEEDK NVGEGGDALP PGVCFDFFRK  420
GQCERGSDCR FSHSLDNARP IRTPRPPPEA CWFCLSSPSI DTHLVVSVGD HCYCAIAKGP  480
LVDSHILILP IEHHPSTISL PADAESELQR YKDALQKCFK TQGKATVFFE RYLQLRAGTH  540
AHLQAVPVPL QKASSVRSAF VSAAKEVGFE FDIICPSDTD PQARQALKEV VGGGANFFFV  600
ELPEGTILAH RLAPGEKLPM QFGREVMASL LGTPERGDWK VCKLDVEEET SMADRFKEQF  660
QSFDLMQSLV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U3e-15449668673891CWF19-like protein 2
6id1_U3e-15449668673891CWF19-like protein 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024399682.10.0zinc finger CCCH domain-containing protein 59-like isoform X1
TrEMBLA0A2K1J8J00.0A0A2K1J8J0_PHYPA; Uncharacterized protein
STRINGPP1S15_97V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-08C3H family protein