PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0000s0040.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | G2-like | ||||||||
Protein Properties | Length: 526aa MW: 58081.4 Da PI: 7.6919 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.7 | 9.3e-32 | 286 | 339 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Sphfalx0000s0040.3.p 286 PRMRWTNSLHQQFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 339 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.87E-16 | 283 | 339 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 284 | 339 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-24 | 285 | 339 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.6E-8 | 287 | 338 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MQESFFTKSL NSSNEEAAHI IIPPAVAGPD LSLQICPPNS YNQLQQQQPP SFPSGLVLAS 60 SNTPHEPMRY PDDFKHKMTP QDTLWLGDHQ NLQPWVNDAK LAAMPPGTVQ LNPISWNRSL 120 ARHAKAGQHE KSHEHIHCGF DLWERQQKSA NCNANSDMSY VSSPRKCYDH EASFGTTASR 180 PDLCIANPSL DLQAASDHGT FSLPAEEKTR GVLHNLQSEY VKPTVAGGLY HCLQSSSNSQ 240 SLLPNLMHIT AGDCTSISSN LQETTRILHC GFIMSKSPSK RSMRNPRMRW TNSLHQQFVH 300 AVELLGGHER ATPKSVLELM NVKDLTLAHV KSHLQMYRTV KTTSKPLSLP GQNDFAESPH 360 NNGRNYGEFL MAQGSLTNRG LETSTFLPKS SNYYSTLGDA QATLLLMQNK KPSQQEASNL 420 WHSPALIPYS SNCIGLEQQL KATHTLSQDK GMENQWMMGL TSPSIKQPPL QFSPPLSEFV 480 SSHTTNIIPK MPNLEFTLGT SGWSSTRGLD HGATDAPQGL FLLKC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-17 | 287 | 341 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-17 | 287 | 341 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-17 | 287 | 341 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-17 | 287 | 341 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-17 | 287 | 341 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-17 | 287 | 341 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-17 | 287 | 341 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-17 | 287 | 341 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 1e-37 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0000s0040.3.p |