PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0000s0040.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | G2-like | ||||||||
Protein Properties | Length: 531aa MW: 58955.4 Da PI: 7.692 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.7 | 9.5e-32 | 298 | 351 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Sphfalx0000s0040.2.p 298 PRMRWTNSLHQQFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 351 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.87E-16 | 295 | 351 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-28 | 296 | 351 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-24 | 297 | 351 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.6E-8 | 299 | 350 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 531 aa Download sequence Send to blast |
MDLRFQASWN FTMQESFFTK SLNSSNEEAA HIIIPPAVAG PDLSLQICPP NSYNQLQQQQ 60 PPSFPSGLVL ASSNTPHEPM RYPDDFKHKM TPQDTLWLGD HQNLQPWVND AKLAAMPPGT 120 VQLNPISWNR SLARHAKAGQ HEKSHEHIHC GFDLWERQQK SANCNANSDM SYVSSPRKCY 180 DHEASFGTTA SRPDLCIANP SLDLQAASDH GTFSLPAEEK TRGVLHNLQS EYVKPTVAGG 240 LYHCLQSSSN SQSLLPNLMH ITAGDCTSIS SNLQETTRIL HCGFIMSKSP SKRSMRNPRM 300 RWTNSLHQQF VHAVELLGGH ERATPKSVLE LMNVKDLTLA HVKSHLQMYR TVKTTRQNDF 360 AESPHNNGRN YGEFLMAQGS LTNRGLETST FLPKSSNYYS TLGDAQATLL LMQNKKPSQQ 420 EASNLWHSPA LIPYSSNCIG LEQQLKATHT LSQDKGMENQ WMMGLTSPSI KQPPLQFSPP 480 LSEFVSSHTT NIIPKMPNLE FTLGTSGWSS TRGLDHGATD APQGLFLLKC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-17 | 299 | 353 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-17 | 299 | 353 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-17 | 299 | 353 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-17 | 299 | 353 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-17 | 299 | 353 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-17 | 299 | 353 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-17 | 299 | 353 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-17 | 299 | 353 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 5e-34 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0000s0040.2.p |