PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.K042600.1.p
Common NameSORBI_K042600
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 315aa    MW: 32453.8 Da    PI: 5.8883
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.K042600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.8e-071222446
                       HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46
                       W+ Ia+ ++ gRt++++k++w++
  Sobic.K042600.1.p  1 WSIIAAQLP-GRTDNDIKNYWNT 22
                       99*******.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001673.84E-5122No hitNo description
Gene3DG3DSA:1.10.10.602.3E-10130IPR009057Homeodomain-like
SuperFamilySSF466894.24E-6129IPR009057Homeodomain-like
PROSITE profilePS5129416.703128IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
WSIIAAQLPG RTDNDIKNYW NTKLKKKLLG KRAPSRRARA NQDPYLAAGA GNMCSTSGGV  60
NNNSAAAATS TQALSASALE RIQLHMRLQG IYGAFGCSAD ANDDSNAAAV AAAPQWPKLE  120
ALLQANRLLP GSLPADAMAT TVSVQQHHQH LVDHQSLAAG ASDAAAVEGE QQLSSAGGAA  180
NYMAPGGFFE RPKLGFYSPS AEAEAPAGGG VEMNSGAPMV GGGYGGAGFG AHHQHDELYD  240
FLYSKYGSVG ELAHDGHVPT LPELQCPDGA AVVGADEKFS AWTASACDYG AAGGHQIQQG  300
NSIMHDYVLG GYDQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.K042600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040574e-36AP004057.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1316_E06.
GenBankAP0149584e-36AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126104e-36CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314448.10.0transcription factor MYB36
TrEMBLA0A109ND560.0A0A109ND56_SORBI; Uncharacterized protein (Fragment)
STRINGSb0826s002010.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Representative plantOGRP1206146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.17e-17myb domain protein 36