PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.K024500.1.p
Common NameSORBI_K024500
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 386aa    MW: 39734.3 Da    PI: 4.838
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.K024500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-13214259555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h  +Er+RR++iN+++ eL +++P +     kK++Ka+iL  A +Y+k+Lq
  Sobic.K024500.1.p 214 HIVAERKRREKINKRLIELSTVIPGL-----KKMDKATILSDAAKYVKELQ 259
                        8899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.618209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-17214267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.41E-15214263No hitNo description
SuperFamilySSF474593.01E-16214268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-11214259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-14215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDTLLQEEEP AVDDVHWAMD TLLQEEEEEH AAVDGGDAVV FPSLQALRDA SHAAEMVREL  60
MAVAAAAETH DAAAANSSPS GGSGDGGGEV TDGGSSGATG TDPAAPATTA ATDYYGGSWP  120
PQSPTSSSFA RAPPPAPPSS NSNTILPTVS WNFVTGSAQP GSEGVLEEAA VPARSLPPPE  180
LAQRRRSPPP PRRAAHHPVR SMGAPSSASC TPDHIVAERK RREKINKRLI ELSTVIPGLK  240
KMDKATILSD AAKYVKELQQ RLKALEDAAA ADAGSIRRKA PPAADENGGS GSPTSASSSS  300
GAPALPEIEA RLSERSVMVR IHSCGGKGVA AAALAVVEGL GLTVVHANVM PFSACTISIT  360
ITAEASPFSS YYSFLPIFIL FGYLD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217222ERKRRE
2218223RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.K024500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071902e-47AK107190.1 Oryza sativa Japonica Group cDNA clone:002-125-A03, full insert sequence.
GenBankHQ8588622e-47HQ858862.1 Oryza sativa Japonica Group isolate UT1671 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306359.10.0transcription factor MYC2
TrEMBLA0A109ND180.0A0A109ND18_SORBI; Uncharacterized protein
STRINGSb2250s002010.11e-179(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4161723
Representative plantOGRP1736623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-19bHLH family protein