PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G279600.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 276aa    MW: 28612.1 Da    PI: 8.5825
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G279600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016115137123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C+ C+k+F++   L  H  +H
  Sobic.010G279600.1.p 115 YECKTCNKCFPSFQALGGHRTSH 137
                           99*********999998888777 PP
2zf-C2H211.90.0007176198123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C+ Cg +F +   L  H+r+H
  Sobic.010G279600.1.p 176 HECSSCGAVFASGQALGGHMRRH 198
                           78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.427115142IPR007087Zinc finger, C2H2
SuperFamilySSF576679.75E-8115137No hitNo description
PfamPF139121.3E-9115137IPR007087Zinc finger, C2H2
SMARTSM003550.11115137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SuperFamilySSF576679.75E-8171198No hitNo description
PfamPF139123.2E-12175199IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743176198IPR007087Zinc finger, C2H2
SMARTSM003550.092176198IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280178198IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSVPDYSTST GGAIIVSCAS VAKLKPQRNS KRRRHHCSSP AASSSSSHSS STTTQKEEEE  60
DEDMARCLIL LAQGPPAAAA VEPARVMPAP APPSRPKSTS RRAAAEAGGG VCVSYECKTC  120
NKCFPSFQAL GGHRTSHNND KKQQPPPPRR PEEAAAAAVT TTLSLRTAAA ATRPAHECSS  180
CGAVFASGQA LGGHMRRHRP LTTSSSAAAA PESVVTATGT TGDQDSSKLL QEGNINLELD  240
LNLLPAPSTE QEVTSPAKPP CHAPAVQLMH ALTRH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G279600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437653.20.0zinc finger protein ZAT5
TrEMBLA0A194YLY80.0A0A194YLY8_SORBI; Uncharacterized protein
STRINGSb10g031270.11e-150(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-17C2H2 family protein