PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G275700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 435aa    MW: 46808.1 Da    PI: 6.4427
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G275700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-1556100147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r +WT+eE+ ++++a k++G   W+ I +++g ++t+ q++s+ qk+
  Sobic.010G275700.1.p  56 REKWTEEEHGKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 100
                           789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.72E-1550104IPR009057Homeodomain-like
PROSITE profilePS5129420.4451105IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-953103IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-1554103IPR006447Myb domain, plants
SMARTSM007171.6E-1255103IPR001005SANT/Myb domain
PfamPF002492.4E-135699IPR001005SANT/Myb domain
CDDcd001675.56E-1058101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MASMAQVQER GGLPIDKRLP PDAVQSPLVD DAMQPKEGTD GYPVKARKPY TITKQREKWT  60
EEEHGKFLEA LKLYGRSWRQ IQEHIGTKTA VQIRSHAQKF FSKVVREPGA SNAIEIPPPR  120
PKRKPLHPYP RKCADSTIAN RPIGEPKNAP ISSSSGSDQE NGSPVSVLSA MQSDAFGSSV  180
SNPSTGCTSP ASSDEGDNVA EVVNGEETIP TQQIEDDQCR QELKQDNSDG ELSEEDSSRV  240
QETSLKLFGK TVIIPDPKKV CSSDGAAGAG EKDSHSSTQE MLQASLVGGV AAVGGVAAYP  300
SHNGWILPFQ SFPVHMYESG DARISPLHIW WPYYGFPANH PRGFGTGLHN EGASESDTSK  360
SPSVESSSDC VGNAHTTTPT NCKVVKESLG PVESGPSVEL KPSVNSAFVR VKPSSGSRDQ  420
PIRGFMPYKR CKVE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.24351e-173callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G275700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0677650.0BT067765.1 Zea mays full-length cDNA clone ZM_BFc0156C11 mRNA, complete cds.
GenBankEU9569780.0EU956978.1 Zea mays clone 1579341 hypothetical protein mRNA, complete cds.
GenBankFJ0240490.0FJ024049.1 Zea mays MYB-like protein E1 (MYBE1) mRNA, complete cds.
GenBankKJ7283160.0KJ728316.1 Zea mays clone pUT6597 MYB-related transcription factor (MYBR96) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305632.10.0uncharacterized protein LOC110431210 isoform X4
TrEMBLA0A194YLX80.0A0A194YLX8_SORBI; Uncharacterized protein
STRINGSb10g030960.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Representative plantOGRP12551549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.13e-41MYB_related family protein