PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G273700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 387aa    MW: 42472.1 Da    PI: 9.2293
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G273700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.61.3e-41762143128
                   NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya......tgk.......rknrat 78 
                           pGfrFhPt+eel+ +yLk+ + g+kl++ ++i++v++y+++Pw+Lp  ++ +e+ewyfF++rd          + +       r++r+t
  Sobic.010G273700.1.p  76 PGFRFHPTEEELLEFYLKQVAYGRKLKF-DIIPTVHLYRHDPWELPGLTRIGEREWYFFVPRDGGGGsraakqH-QsgsggggRPSRTT 162
                           9**************************9.99***************8788899*******99865442333330.1344555599999* PP

                   NAM  79 ksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++g+Wkatg+d++v ++   ++l+glkktLv+y+grap+g+ktdWvm+eyrl
  Sobic.010G273700.1.p 163 ERGFWKATGSDRAVRCAadPKRLIGLKKTLVYYEGRAPRGTKTDWVMNEYRL 214
                           ***************98777788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100549.23274249IPR003441NAC domain
SuperFamilySSF1019412.09E-4975249IPR003441NAC domain
PfamPF023657.7E-2376214IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSPPPPPPLL APRRPIYAEG THPLPSHLRS GSQQQPAAHL HHRSIKQQQP AAARESNQRQ  60
SMSSSGGAGA AELELPGFRF HPTEEELLEF YLKQVAYGRK LKFDIIPTVH LYRHDPWELP  120
GLTRIGEREW YFFVPRDGGG GSRAAKQHQS GSGGGGRPSR TTERGFWKAT GSDRAVRCAA  180
DPKRLIGLKK TLVYYEGRAP RGTKTDWVMN EYRLPDATCC NAAGGDSSAA SSTNKSPKED  240
IVLCKIYRKA VSLKELEQRV AMEELARATA TPSASHSTGS PADSMSSSDH ETAAAAVDHH  300
SQKQQGVETM TMMPVGILPP PVMSMKKEEV AEPLLPAAAL MKPATLSLPQ LEVAKQQEWM  360
QDPFLTQLRS PWMESWSPYY ASVLNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-417124911168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G273700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9676331e-152EU967633.1 Zea mays clone 304978 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439057.10.0NAC domain-containing protein 67
SwissprotQ10S657e-98NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A194YLW20.0A0A194YLW2_SORBI; Uncharacterized protein
STRINGSb10g030770.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP177038105
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-69NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]