PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G254300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 498aa    MW: 54562.9 Da    PI: 6.4605
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G254300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.64.5e-31272326155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k rlrWt eLHerF+eav++L G+ekAtPk +l+lmkv+gLt++hvkSHLQkYRl
  Sobic.010G254300.1.p 272 KSRLRWTLELHERFLEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRL 326
                           68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.286269329IPR017930Myb domain
SuperFamilySSF466891.33E-16270326IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-29270327IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-24272327IPR006447Myb domain, plants
PfamPF002492.2E-8274325IPR001005SANT/Myb domain
PfamPF143793.2E-21362406IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MESVNHLQAM NSQSLLAMEQ IAASDKTAHV SALSVHKLFD AKLDHHSLMD GTSASTSQSS  60
NIKTELIRSS SLSRSLSVNL QKRSPESDPE SPQSHVSHPK FSEPMFSNSS TFCTSLFSSS  120
STKTEPCHQM GTLPFLPHPP KCEQQVSAGQ SSSSSLLLSG DTGNGLDEAE QSDDLKDFLD  180
LSGDASDGSF QENNALAYDE QMEFQFLSEQ LGIAITDNEK SPHLDDIYGT PPQLSSLPIS  240
SCSTQSIQDL GSPVKVQLSS SQSSSSSATT NKSRLRWTLE LHERFLEAVK KLEGPEKATP  300
KGVLKLMKVE GLTIYHVKSH LQKYRLAKYL PGPKEDKKAS SEDKKAQTGK SGSDSSKNKN  360
LQVAEALRMQ IEVQKQLHEQ LEVQRQLQLR IEEHARYLQK ILEEQKAGSL SLKAPTKAQA  420
TESPESTLDE VSTTPQPSRN RNPVVDTECK SPVDTECKSP ARPSKNRIPV VDTECKSPAR  480
IKRTKVQVDL ENETLCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-24272329259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-24272329259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-24272329259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-24272329259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-24272329259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-24272329259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-24272329259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-24272329259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout all stages of plant growth. Increased expression in leaves before the booting stage. {ECO:0000269|PubMed:26082401}.
UniprotTISSUE SPECIFICITY: Expressed in the root cap and in the exodermis of the root, in the root tip of lateral roots, in the mesophyll cells of the leaf, in pollen, vascular cylinder of the anther and the veins of the lemma, palea and pistils, and in the xylem and phloem regions of large vascular bundles, small vascular bundles and diffuse vascular bundles in node I (PubMed:26082401). {ECO:0000269|PubMed:26082401}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:26082401}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G254300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269|PubMed:26082401}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1846680.0KF184668.1 Saccharum hybrid cultivar R570 clone BAC 005I10 complete sequence.
GenBankKF1847070.0KF184707.1 Saccharum hybrid cultivar R570 clone BAC 084G07 complete sequence.
GenBankKF1848330.0KF184833.1 Saccharum hybrid cultivar R570 clone BAC 001I10 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437549.20.0protein PHOSPHATE STARVATION RESPONSE 3
SwissprotQ6YXZ41e-153PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBLA0A1W0VUS70.0A0A1W0VUS7_SORBI; Uncharacterized protein
STRINGSb10g029200.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45263769
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.23e-62G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]