PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G254200.2.p
Common NameSb10g029190, SORBIDRAFT_10g029190
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family SBP
Protein Properties Length: 441aa    MW: 47690.1 Da    PI: 9.9821
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G254200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.42.8e-40160236278
                           -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           CqvegC++dls+ak+y+r+hkvC +hskap+v+v+gle+rfCqqCsrfh l efD++krsCrrrL +hn+rrrk+qa
  Sobic.010G254200.2.p 160 CQVEGCKVDLSSAKDYNRKHKVCVAHSKAPKVVVAGLERRFCQQCSRFHGLAEFDQNKRSCRRRLTHHNARRRKPQA 236
                           **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-32152221IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.223157234IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.84E-38158239IPR004333Transcription factor, SBP-box
PfamPF031109.4E-31160233IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MGSFGMNWNQ KNSMVWDWEH LVPSVSNAVT RHGSANSSGG TLTSSSELGH GSSKSSISAS  60
IDSPSGVGNS LEFNFAAVQR HVKNTGTNGR VDDSGNSPSS MIAFSQGEPL ISLKLGKRAY  120
FENVCGGQEA KVSAPSDVTS AVTVVKKTKV SQQNAKNWYC QVEGCKVDLS SAKDYNRKHK  180
VCVAHSKAPK VVVAGLERRF CQQCSRFHGL AEFDQNKRSC RRRLTHHNAR RRKPQADAIS  240
FNSSRLSSMF YDTSHRTNLF FSQPLYGQVR SNAVSPWDNS GGFKFMETKH LSVQPTKTVG  300
LDELHFSTPQ ISTSVVAHTG HHHNFDRFMP FKGTNTKVLN QVSGVEASAT ASNSNNGAPE  360
PGRALSLLSD GSWGSNSAVI QQPPSHADAG ALPPLATVAV SNTAARHPLD PSLGRFWQDD  420
HPPLDGPAPQ IQELAHLRTW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-261602331184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G254200.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9733000.0EU973300.1 Zea mays clone 396397 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438971.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_021305400.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_021305401.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_021305402.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_021305403.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_021305404.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_021305405.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_021305406.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_021305407.10.0squamosa promoter-binding-like protein 12 isoform X1
SwissprotA2YGR51e-156SPL12_ORYSI; Squamosa promoter-binding-like protein 12
TrEMBLA0A1W0VUS80.0A0A1W0VUS8_SORBI; Uncharacterized protein
STRINGSb10g029190.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.35e-36squamosa promoter binding protein-like 2