PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G240900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 196aa MW: 20335.5 Da PI: 7.3862 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 18 | 67 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp k++ ++lg+f++ae Aa+a++aa+++l+g Sobic.010G240900.2.p 18 RYRGVRRRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARAYDAAARSLRG 67 59*******.7*********83...36*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-29 | 18 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.168 | 18 | 75 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.1E-12 | 18 | 67 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.5E-34 | 18 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-21 | 18 | 75 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.73E-16 | 18 | 75 | No hit | No description |
PRINTS | PR00367 | 8.1E-8 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-8 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MRRAKPPQPQ PSPSPEIRYR GVRRRPSGRY AAEIRDPAKK TPIWLGTFDS AEAAARAYDA 60 AARSLRGPTA RTNFPSAAAP VPRHRAPSAS AAAAPAAAAA ATSSHSSTVE SWSGGAPRAP 120 SALPRSAAAP MEEDDDEDCH SYCGSSSSVL CEDACGDDAA ASRAPLPFDL NLPPPLDAAA 180 EADQMGARYD TLLRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-19 | 18 | 75 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G240900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953833 | 0.0 | EU953833.1 Zea mays clone 1447216 ethylene-responsive transcription factor 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021306174.1 | 1e-132 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | C5Z8P3 | 1e-131 | C5Z8P3_SORBI; Uncharacterized protein | ||||
STRING | Sb10g028110.1 | 5e-90 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6102 | 23 | 47 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 1e-09 | ethylene response factor 7 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G240900.2.p |