PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G237800.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 314aa    MW: 34306.5 Da    PI: 4.8652
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G237800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011286309123
                           EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                           y C+ C+k+F ++  L++H ++ H
  Sobic.010G237800.2.p 286 YACKSCSKTFYSSVGLETHCKVkH 309
                           89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.198286313IPR007087Zinc finger, C2H2
PROSITE patternPS000280288309IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MPMVNGIFEY WGVVVRPGAT VKCDPGEFYC HVSQIALQDS KGNEDVRVFV KADGKKFLIG  60
TLSVDKYPQY TTSLVFEKEF ELLHTSKTST ISALGYKFRH CNRKYDSETS TEEGDESNEE  120
VPQAIPLYPN ADDDKSKESK CGVEKPAATE SSKSKVSLEE AKVPDKHKAD VGGDDNDESD  180
EDVDSEDGES GDDESSSDED DGESSNEDDD EDSPKSTKRN NRPAETPLKT PPGKKARITT  240
PSMGKKSVSD DAKRSNHVHV ATPYPSSKQV KTARSIIDNS KQSTGYACKS CSKTFYSSVG  300
LETHCKVKHS ACK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G237800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0352541e-131BT035254.1 Zea mays full-length cDNA clone ZM_BFb0051D01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437480.20.0histone deacetylase HDT2 isoform X1
TrEMBLA0A194YL670.0A0A194YL67_SORBI; Uncharacterized protein
STRINGSb10g027913.11e-167(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111732022
Representative plantOGRP10531129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.12e-19histone deacetylase 2C