PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G236300.1.p
Common NameSb10g027790, SORBIDRAFT_10g027790
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARF
Protein Properties Length: 710aa    MW: 76700.2 Da    PI: 7.661
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G236300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.5e-24128229199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF
  Sobic.010G236300.1.p 128 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVF 214
                           89****************************996555555..8999******************************************** PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                           +  +++++ l+v+++r+
  Sobic.010G236300.1.p 215 M--RTENGDLCVGIRRA 229
                           *..4588999****997 PP
2Auxin_resp116.32.7e-38295378183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                           aa+ a ++++FevvY+Prast+eF+vk+  v++a+++++++GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  Sobic.010G236300.1.p 295 AANLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWCAGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 378
                           688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-37121234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.93E-29123230IPR015300DNA-binding pseudobarrel domain
CDDcd100179.74E-21127228No hitNo description
PROSITE profilePS5086312.999128230IPR003340B3 DNA binding domain
PfamPF023622.5E-22128229IPR003340B3 DNA binding domain
SMARTSM010193.4E-21128230IPR003340B3 DNA binding domain
PfamPF065075.0E-33295378IPR010525Auxin response factor
PROSITE profilePS5174522.245626707IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MITFVDSAAM ERERESDRCL DPQLWHACAG GMVQMPPVHS KVYYFPQGHA EHAQGPVVDL  60
PAGRVPALVL CRVAAVRFMA DPDTDEVFAK IRLAPVRPNE PGYAADADDA IGAAAAGGGA  120
QEDKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQTVLA KDVHGVVWKF  180
RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFMRTENG DLCVGIRRAK KGGIGGPEFL  240
HHHQPPPPPG GGGYAGFSMF LRGGEEDGSK MMATGAATRG NKVRVRVRPE EVVEAANLAV  300
SGQPFEVVYY PRASTPEFCV KAGAVRAAMR TQWCAGMRFK MAFETEDSSR ISWFMGTVSA  360
VQVADPIRWP NSPWRLLQVA WDEPDLLQNV KRVSPWLVEL VSNMPAIHHL TPFSPPPRKK  420
LCVPLYPELP LEGHQFPAPM FHGSPLGRGV GPMCYFPDGT PAGIQGARHA QFGISLSDLH  480
LDKLQSSLSP HGLHHHQLDG HGVQPRIAAG LIIGHPAAAR DDISCLLTIG TTPQNRKPSS  540
DVKKAAAAAP QLMLFGKPIL TEQQISLGNV AGFPAPKKSP SDDVAERTVS NSDVSSPGSN  600
HGGSSRSSGG APSCQDNKVP DLGLETGHCK VFMQSEDVGR TLDLSAVGSY EELYQRLADM  660
FGIDKTELMS HVFYRDDASG ALKHTGDKPF SEFTKTARRL TILTDAEQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-77339932388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.186642e-90ovary| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G236300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0045340.0HM004534.1 Zea mays auxin response factor 19 (ARF19) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437473.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLC5Z8A50.0C5Z8A5_SORBI; Auxin response factor
STRINGSb10g027790.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]