PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G230200.1.p | ||||||||
Common Name | Sb10g027280, SORBIDRAFT_10g027280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 429aa MW: 45764.2 Da PI: 7.1851 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.2e-17 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+llvd v+++G g+W+t+ r+ g+ R++k+c++rw ++l Sobic.010G230200.1.p 27 KGPWTQAEDKLLVDHVRRHGEGNWNTVRRETGLLRCGKSCRLRWANHL 74 79******************************99**********9986 PP | |||||||
2 | Myb_DNA-binding | 42.5 | 1.5e-13 | 80 | 123 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ ++ ++ + G++ W++I+++++ gRt++++k++w++ Sobic.010G230200.1.p 80 KGPFSPEEERHILILHGLNGNK-WAKISSYLP-GRTDNEIKNYWNT 123 79********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.596 | 22 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.11E-29 | 25 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-13 | 26 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 27 | 74 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-21 | 28 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.46E-11 | 29 | 74 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 42 | 51 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
PROSITE profile | PS51294 | 25.294 | 75 | 129 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-12 | 79 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-13 | 80 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.67E-9 | 82 | 125 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-23 | 82 | 128 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MARSGGGGSV GVEGGGGGGT GGGGLRKGPW TQAEDKLLVD HVRRHGEGNW NTVRRETGLL 60 RCGKSCRLRW ANHLRPNLRK GPFSPEEERH ILILHGLNGN KWAKISSYLP GRTDNEIKNY 120 WNTRLKRRQR AGLPLYPPDV ERDIAILRAQ NADADANAHA NANASLPPPP PLLYDASNPF 180 VALPPTMPSP SPTHSPLQIN QNYPLLNQMQ VFHHIGGSHH QQQQQPQPAF HQDNGSAAAA 240 FGSGIVSSGL PPLPTATARA QQLELPSNQQ FDTSSSGSGS GSVGLLESML IGDEHLMLRP 300 NPSMVKVPSM PALSYREPAG SRLLPAHGVG SDGDVTSHAH ALCPPGEDIH HGATWDFTFE 360 AVKPAKRRTA SEVGISDMFA IAPAGDWFGT CGGSTGPSSA VTDDEFNLEM QQFMSLLPLS 420 IDEHGCNA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-28 | 25 | 128 | 5 | 107 | B-MYB |
1h8a_C | 1e-27 | 25 | 128 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.20935 | 0.0 | ovary| pollen |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G230200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038723 | 1e-139 | BT038723.1 Zea mays full-length cDNA clone ZM_BFb0313M23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002438857.1 | 0.0 | transcription factor MYB104 isoform X1 | ||||
TrEMBL | C5Z7V2 | 0.0 | C5Z7V2_SORBI; Uncharacterized protein | ||||
STRING | Sb10g027280.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12397 | 26 | 32 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 1e-58 | myb domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G230200.1.p |
Entrez Gene | 8083214 |