PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G229000.1.p
Common NameSb10g027220, SORBIDRAFT_10g027220
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARF
Protein Properties Length: 920aa    MW: 101692 Da    PI: 6.3623
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G229000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.91e-24135236199
                           EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                           f+k+lt sd++++g +++p++ ae+        ++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F 
  Sobic.010G229000.1.p 135 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfTQQPPCQ-ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 222
                           99*****************************96666675.9************************************************ PP

                           E-SSSEE..EEEEE-S CS
                    B3  84 ldgrsefelvvkvfrk 99 
                             ++++ +l+++++r+
  Sobic.010G229000.1.p 223 --WNDNNQLLLGIRRA 236
                           ..7777778***9997 PP
2Auxin_resp120.11.7e-39261344183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  Sobic.010G229000.1.p 261 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 344
                           79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-48120264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-43126250IPR015300DNA-binding pseudobarrel domain
CDDcd100175.51E-22134235No hitNo description
SMARTSM010191.7E-25135237IPR003340B3 DNA binding domain
PROSITE profilePS5086312.957135237IPR003340B3 DNA binding domain
PfamPF023623.8E-23135236IPR003340B3 DNA binding domain
PfamPF065071.3E-34261344IPR010525Auxin response factor
SuperFamilySSF542771.44E-7778863No hitNo description
PfamPF023091.5E-8784873IPR033389AUX/IAA domain
PROSITE profilePS5174523.318787871IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 920 aa     Download sequence    Send to blast
MRLSSSSGSV IPAAQPGSPE AVEEHKCLNS ELWHACAGPL VSLPAVGSRV VYFPQGHSEQ  60
VAASTNKEME SQIPNYPNLP PQLICQLHNV TMHADAETDE VYAQMTLQPL NPQELKDPYL  120
PAELGSANKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFTQQP PCQELMAKDL  180
HGNEWKFRHI FRGQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNDNNQLL LGIRRANRPQ  240
TVMPSSVLSS DSMHIGLLAA AAHAASTNSR FTIFYNPRAS PSEFVIPLAK YVKAVYHTRI  300
SVGMRFRMLF ETEESSVRRY MGTITGISDL DSVRWPNSHW RSVKVGWDES TAGERQPRVS  360
LWEIEPLTTF PMYPSPFPLR LKRPWPTGLP SLHGGKDDDL ANSLMWLRDA ANPGFQSLNF  420
GGLGMNPWMQ PRLDASLLGL QPDMYQAMAT AAFQDPTKQV SSPTMLQFQQ PQNIAGRATP  480
LLSSQILQQS HPQFQQQQYL QNISESTIQA QGQSEFLKQQ IQRSQSFNEQ KPQLQPQQQQ  540
QESQQQQQQQ SQCLQVPQHQ QMQQHNMTNY QSVSNALSAF SQLSSASQSS PVSLQTILPF  600
SQAQSFTDTN VSSLSPSNTN TMQNTLRPFS SEAVSHLSMP RPTAIPVSDP WSSKRVAVES  660
LLPSRPQVSS QMEQLDSAPA SIPHSSALAP LPGRGCLVDQ DVNSDPQNHV LFGVSIDSQS  720
LLMQGGIPGL QNGNDSTAIP YSTSNFLSPS QNDFPLDHTL NSPGCLDDSG YVPPCSDNSD  780
QVNRPPATFV KVYKSGTYGR SLDITRFSSY HELRRELGRL FGLEGQLEDP LRSGWQLVFV  840
DREEDVLLVG DDPWQEFVST VSCIKILSPQ EVQQMGKQGL ELLSSGPARR LGSSCDDYVS  900
RQESRSLSTG IASVGSVEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1602836551388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G229000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0883180.0BT088318.1 Zea mays full-length cDNA clone ZM_BFc0133F15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438851.10.0auxin response factor 17
RefseqXP_021304949.10.0auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLC5Z7U50.0C5Z7U5_SORBI; Auxin response factor
STRINGSb10g027220.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Representative plantOGRP8561456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]