PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G227300.1.p | ||||||||
Common Name | Sb10g027100, SORBIDRAFT_10g027100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 308aa MW: 34150.7 Da PI: 7.8438 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.6 | 7e-51 | 13 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........lelee....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 lppGfrFhP+d+elv +yL+kk++g ++ ++ +vd++k+ePwdLp+ + + kewyf+s rd+kyatg+r+nra Sobic.010G227300.1.p 13 LPPGFRFHPRDDELVLDYLAKKLAGGAgvgggplvVS--IygcpAMVDVDLNKCEPWDLPEIACIGGKEWYFYSLRDRKYATGQRTNRA 99 79***********************998888876622..1444479**************7666789********************** PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 t+sgyWkatgkd+++ + kg lvg++ktLvfy+grapkg+kt+Wvmhe+r+ Sobic.010G227300.1.p 100 TDSGYWKATGKDRPISR-KGLLVGMRKTLVFYQGRAPKGKKTEWVMHEFRM 149 ***************99.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-60 | 5 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.795 | 13 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-25 | 14 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MAINSLSMVE ARLPPGFRFH PRDDELVLDY LAKKLAGGAG VGGGPLVVSI YGCPAMVDVD 60 LNKCEPWDLP EIACIGGKEW YFYSLRDRKY ATGQRTNRAT DSGYWKATGK DRPISRKGLL 120 VGMRKTLVFY QGRAPKGKKT EWVMHEFRME GQGDPMKLPF KEDWVLCRVF YKSRATVAKP 180 PTESSSSFNI DAATTSLPPL IDNNYNISFD QPGSSVQNLE GYEQVPCFSS NPSQLSSSIN 240 APLSSAATMA DPEQHMGKSI IKDVLMSQFS RFEAGNVKRE APQSNFSQDG FEYLAESGFT 300 QMWNSFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-50 | 9 | 173 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G227300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065512 | 0.0 | BT065512.1 Zea mays full-length cDNA clone ZM_BFb0202I06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002437440.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 1e-85 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | C5Z7T1 | 0.0 | C5Z7T1_SORBI; Uncharacterized protein | ||||
STRING | Sb10g027100.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 6e-84 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G227300.1.p |
Entrez Gene | 8083201 |