PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G214000.1.p
Common NameSb10g026060, SORBIDRAFT_10g026060
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CO-like
Protein Properties Length: 377aa    MW: 40033.6 Da    PI: 6.4202
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G214000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.35.5e-0755100342
              zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                            ++C+ +e  ++   C+ +   lC+ C   +H        H +vp+
  Sobic.010G214000.1.p  55 VWVCEVCELAPAAVTCKADAAVLCAACDADIHDAnplarrHARVPV 100
                           689*****************************44677777888775 PP
2CCT70.34.8e-24300343144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k+a
  Sobic.010G214000.1.p 300 REARLMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRA 343
                           9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.23951IPR000315B-box-type zinc finger
CDDcd000210.006161257No hitNo description
PROSITE profilePS5011910.35253100IPR000315B-box-type zinc finger
SMARTSM003366.9E-1353100IPR000315B-box-type zinc finger
CDDcd000211.21E-656100No hitNo description
PfamPF062038.6E-18300342IPR010402CCT domain
PROSITE profilePS5101716.896300342IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MELHKYWGVG GRRCGSCEAA PAAVHCRTCV GGSSSFLCTT CDARPAHARL AHERVWVCEV  60
CELAPAAVTC KADAAVLCAA CDADIHDANP LARRHARVPV APIGSEAAAA AVEAMLFGTG  120
DAAEADDQHN NAAAAAEQHQ HQHHAHHAHA LNLNVEAKDM KLDYLFSELD PYLSVEIPRF  180
HHADSVVPNG AGAAGAVELD FTCGIGVKHS SYSSYTATSL DLAHSGSSSE VGVVPEAFGG  240
GGGGGGGSFE LDFTRPKPQA YMPYTATPQS HSVSSVDVEV VPERGDLPAV RPVPLMGESR  300
EARLMRYREK RKNRRFEKTI RYASRKAYAE TRPRIKGRFA KRADHDGDGD ADDAEAEAAV  360
PSSYVLDFGY GVVPSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.6850.0embryo| ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G214000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278410.0KJ727841.1 Zea mays clone pUT5885 C2C2-CO-like transcription factor (COL13) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438778.10.0zinc finger protein CONSTANS-LIKE 5
TrEMBLC5Z7750.0C5Z775_SORBI; Uncharacterized protein
STRINGSb10g026060.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38442348
Representative plantOGRP6911767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.13e-22CONSTANS-like 5