PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G209200.1.p | ||||||||
Common Name | Sb10g025600, SORBIDRAFT_10g025600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | WRKY | ||||||||
Protein Properties | Length: 343aa MW: 36958.6 Da PI: 9.8007 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.8 | 3.1e-30 | 188 | 247 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ k++++pr+YYrC++a +Cpvkkkv+rsa+d +v++ tYegeHnh Sobic.010G209200.1.p 188 VKDGYQWRKYGQKVTKDNPCPRAYYRCSFApSCPVKKKVQRSADDSTVLVATYEGEHNHG 247 58***************************99****************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 26.934 | 183 | 249 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-26 | 187 | 249 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-29 | 187 | 249 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-35 | 188 | 248 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-25 | 189 | 246 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MDPWVGHQPS LSLDLNVGLL PTARPAVPAK TTKVLVEENF MAVKKDPEVE KLEAELRRVG 60 DENKRLSEML RAVVAKYTEL KGQVNDMVAA ANHTGSSTSE GGSAASPSRK RIRSAGDNSL 120 DTAAQHHHSR KPSPPLTASA QAHDQAECTS AAVSVTAAAF RRAVREECRP KVSRRYVHAD 180 PADLSLVVKD GYQWRKYGQK VTKDNPCPRA YYRCSFAPSC PVKKKVQRSA DDSTVLVATY 240 EGEHNHGQPP QHDGGRAARS TATAQAQVAS EAAVRPVAAP LPLQHPHQQQ KQEAATTVPS 300 SEVARKNLAE HMAVTLTRDP GFKAALVSAL SGRILELSPT RD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-22 | 187 | 250 | 13 | 75 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:23462973). Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Regulates negatively the basal defense responses to the compatible fungus M.oryzae (PubMed:23462973, PubMed:21726398). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:21961049, ECO:0000269|PubMed:23462973}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00251 | DAP | Transfer from AT1G80840 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G209200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Accumulates in response to M.oryzae (PubMed:21726398). {ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:23462973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728369 | 1e-172 | KJ728369.1 Zea mays clone pUT6651 WRKY transcription factor (WRKY124) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002438757.1 | 0.0 | WRKY transcription factor WRKY28 | ||||
Swissprot | Q0DAJ3 | 1e-139 | WRK28_ORYSJ; WRKY transcription factor WRKY28 | ||||
TrEMBL | C5Z6T5 | 0.0 | C5Z6T5_SORBI; Uncharacterized protein | ||||
STRING | Sb10g025600.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1822 | 38 | 103 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 9e-50 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G209200.1.p |
Entrez Gene | 8058421 |