PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G209100.1.p | ||||||||
Common Name | Sb10g025590, SORBIDRAFT_10g025590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | WRKY | ||||||||
Protein Properties | Length: 349aa MW: 37825.7 Da PI: 10.1732 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.7 | 3.1e-30 | 190 | 249 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ k++++pr+YYrC++a +Cpvkkkv+rsa+d +v++ tYegeHnh Sobic.010G209100.1.p 190 VKDGYQWRKYGQKVTKDNPCPRAYYRCSFApSCPVKKKVQRSADDSTVLVATYEGEHNHG 249 58***************************99****************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 26.934 | 185 | 251 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-29 | 189 | 251 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-26 | 189 | 251 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-35 | 190 | 250 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-25 | 191 | 248 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MDPWVGHQPS LSLDLNVGLL PTARPAVPAK STKVLVQENF MAVKKDNREV EKLEAELRRV 60 GEENRRLSEM LRAVVAKYTE LKGQVDDMVV ATANHTGSST SEGGSAASPS RKRIRSAGDN 120 SLDTAAQHHH RRKPSPPLAA AVAAHDQTEC TSAAVSVTAA AFRRAVREEC RPKVSRRYVH 180 ADPADLSLVV KDGYQWRKYG QKVTKDNPCP RAYYRCSFAP SCPVKKKVQR SADDSTVLVA 240 TYEGEHNHGQ PPQHDGGRAA RSTATAQAQV ASEAAVRPVA APLPLQHPHQ QQKQKQKQEA 300 ATTVPSSEVA RKNLAEHMAV TLTRDPGFKA ALVSALSGRI LELSPTRD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-22 | 189 | 252 | 13 | 75 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:23462973). Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Regulates negatively the basal defense responses to the compatible fungus M.oryzae (PubMed:23462973, PubMed:21726398). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:21961049, ECO:0000269|PubMed:23462973}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G209100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Accumulates in response to M.oryzae (PubMed:21726398). {ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:23462973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002437362.1 | 0.0 | WRKY transcription factor WRKY28 | ||||
Swissprot | Q0DAJ3 | 1e-136 | WRK28_ORYSJ; WRKY transcription factor WRKY28 | ||||
TrEMBL | C5Z6T4 | 0.0 | C5Z6T4_SORBI; Uncharacterized protein | ||||
STRING | Sb10g025590.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1822 | 38 | 103 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 5e-45 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G209100.1.p |
Entrez Gene | 8058420 |