PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G208300.1.p | ||||||||
Common Name | Sb10g025500, SORBIDRAFT_10g025500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | G2-like | ||||||||
Protein Properties | Length: 546aa MW: 59511.7 Da PI: 7.071 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 83.4 | 2.4e-26 | 96 | 149 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt +LH++F+ea++++ G +kA+Pk+ile+m+v+g+t e+v+SHLQk+R+ Sobic.010G208300.1.p 96 KQRVEWTRQLHSKFLEAINHI-GMDKAVPKKILEVMNVDGITKENVASHLQKFRM 149 79*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 12.502 | 1 | 33 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 9.2E-6 | 2 | 49 | No hit | No description |
PROSITE profile | PS51294 | 9.602 | 93 | 155 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-18 | 93 | 153 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-26 | 94 | 153 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.2E-25 | 96 | 149 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
METMAKAIQH GACHYMVKPV RPEMVKNIWL HVVRKGKSNL RNKVNTRNDK PSQIVQPVDD 60 ENGEKDDAKY TRKHCKKNRK DGDGAEKDEV ISTQKKQRVE WTRQLHSKFL EAINHIGMDK 120 AVPKKILEVM NVDGITKENV ASHLQKFRMY LKKQKEGTLK YSAFVDEQQA WLNGKTHVNS 180 NMSVPECSST QISNEHPPLG TSMSFPSSCS GISYASKLRA SILGSNKGIP FDPDSFFEEM 240 AGGELLQSPE LANHPLAQIQ SLSTDQVAPS SHLPLQSPEL VNQPSTQIWS SSIGMLNQVA 300 REPPQFTSRN SSNYWTTSVS SSFHDGQNVG MSIGPSQRNN IFMNQLPGLV ASSHSVPSSR 360 NEYQNQMAGV MGTTPMVSFN EKATLAPFNF GSNGSSTVMP VNNFVPGSSL STRPSLSNLK 420 ICNSLILTQM PNGGGTTGNL PEGGTVGHQT VGDQENNKIQ LPMSTREVQI DMPVQMLNGG 480 ASGNLPKGSN TDLHPAGDQV NSTNELPTAG TSEAQNGAID NIDAFLADWV KQDLLNDDDA 540 FFNGM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-22 | 92 | 153 | 1 | 62 | ARR10-B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G208300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021305586.1 | 0.0 | two-component response regulator ORR24 | ||||
TrEMBL | C5Z6S8 | 0.0 | C5Z6S8_SORBI; Uncharacterized protein | ||||
STRING | Sb10g025500.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP41627 | 2 | 3 | Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 5e-34 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G208300.1.p |
Entrez Gene | 8058416 |