PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G208100.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARR-B
Protein Properties Length: 543aa    MW: 59574.9 Da    PI: 6.2802
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G208100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.54.7e-26155208155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k+r++Wt +LH++F+ea++++ G ++A+Pk+ile+m+v+g+t e+v+SHLQk+R+
  Sobic.010G208100.2.p 155 KQRVEWTRQLHSKFLEAINHI-GMDNAVPKKILEVMNVDGITKENVASHLQKFRM 208
                           79*******************.********************************8 PP
2Response_reg43.81.4e-1548830108
                           SSHHHHHHHHHHHH.....ESEEEEESSCTT..SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHH CS
          Response_reg  30 ddgeealellkekd.....pDlillDiempg..mdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelv 108
                           +d + al++l+e++     +Dl++ D  +p+  ++Gl++l+  + e  ++p+iv++a++e+e++ +a++ Ga  + +Kp+ pe + 
  Sobic.010G208100.2.p   4 ADVSTALDMLRERKdgddqFDLVISDFFIPNngINGLKFLELVAVEM-DIPVIVLSANDEMETMAKAIQHGACHYMVKPVRPEMVK 88 
                           4455566666555555599*******9999988*******9987755.9******************************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004480.0064190IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011027.508195IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.64E-15185No hitNo description
SuperFamilySSF521721.85E-17298IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.4E-202113No hitNo description
PfamPF000725.3E-11487IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466891.08E-18152212IPR009057Homeodomain-like
PROSITE profilePS512949.635152214IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-26153212IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-24155208IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
TIVADVSTAL DMLRERKDGD DQFDLVISDF FIPNNGINGL KFLELVAVEM DIPVIVLSAN  60
DEMETMAKAI QHGACHYMVK PVRPEMVKNI WLHVVRKSKS NIRNKVNNRN DNPSQIGQPV  120
DDEKDDAKHT RKHCKKNRKD GDGSEKDEVI STQKKQRVEW TRQLHSKFLE AINHIGMDNA  180
VPKKILEVMN VDGITKENVA SHLQKFRMYL KKQKEGTLKY SAFVDEQQAW LNGKTHVNSN  240
MSVPECSSTQ ISNEHPPLGT SMSFPSSCSG ISYASKLRAS ILGSNKGIPF DPDSFFEEMA  300
GVAPSSHLPL QSPELVNLPS TQIWSSSIGM LNQVAREPPQ FTSRNSNNYW TTGVSSSFHD  360
GQNVGMSIGP SQRNNIFMNQ LPGLVASSQS VPCSRNEYHQ NQMAGVMGTT PMVSFNEQAT  420
LAPFNFGSNG SSTVMPINNF VPGSSLSTRP SLSNLKICNS LILTQMPNGG GTTGNLPEGG  480
TVGHQTVGDQ ENNKIQLPIT NELPTAGTSE AQNGAIDNID AFFADWVKQD LLNDDDAFFN  540
GM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-22151212162ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G208100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305586.10.0two-component response regulator ORR24
TrEMBLA0A1W0VU470.0A0A1W0VU47_SORBI; Uncharacterized protein (Fragment)
STRINGSb10g025500.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4162723
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.19e-49response regulator 10